EcoliWiki - User contributions [en]

ftsN:Gene Product(s)

2010-08-23T19:14:12Z

Keseler: Table edited by Keseler via TableEdit

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<noinclude>{{TabsTop}}
{{Tab|Quickview|ftsN}}{{Tab|Gene|ftsN}}{{Tab On|Gene Product(s)|ftsN}}{{Tab|Expression|ftsN}}{{Tab|Evolution|ftsN}}{{Tab|On One Page|ftsN}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="N46ab0eb18107e" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
FtsN
|-
!align=left {{table heading style}} |Synonyms
||
essential cell division protein<ref name='LIB:Riley_2006'/>, B3933<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MsgA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FtsN<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!align=left {{table heading style}} |Product description
||
essential cell division protein FtsN<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>

Cell division and growth; multicopy suppresses ftsA12<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||

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<protect></protect>
===Notes===

==Function==
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<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| {{Prettytable}} id="W46ab0eb2a71da" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0000910
|
cytokinesis
|
PMID:9282742
|
IMP: Inferred from Mutant Phenotype
|

|
P
|

|
complete
|-
|

|
GO:0051301
|
cell division
|
PMID:9282742
|
IMP: Inferred from Mutant Phenotype
|

|
P
|

|
complete
|-
|

|
GO:0000917
|
barrier septum formation
|
PMID:9282742
|
IMP: Inferred from Mutant Phenotype
|

|
P
|

|
complete
|-
|

|
GO:0005886
|
plasma membrane
|
PMID:8509333
|
IDA: Inferred from Direct Assay
|

|
C
|

|
complete
|-
|

|
GO:0005515
|
protein binding
|
PMID:18165305
|
IGI: Inferred from Genetic Interaction
|

|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
Missing: with/from
|-
|

|
GO:0005624
|
membrane fraction
|
PMID:8509333
|
IDA: Inferred from Direct Assay
|

|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005886
|
plasma membrane
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0997
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005886
|
plasma membrane
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-1003
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005515
|
protein binding
|
PMID:18165305
|
IGI: Inferred from Genetic Interaction
|
EcoliWiki:mtgA

|
F
|

|
complete
|-
|

|
GO:0016020
|
membrane
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0472
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0000917
|
barrier septum formation
|

|

|

|
P
|

|
Missing: evidence, reference
|-
|

|
GO:0016021
|
integral to membrane
|
GOA:spkw SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0812
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0016021
|
integral to membrane
|
GO_REF:0000023
|
IEA: Inferred from Electronic Annotation
|
SP_SL:SL-9906
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0033205
|
cell cycle cytokinesis
|
PMID:8509333
|
IGI: Inferred from Genetic Interaction
|

|
P
|
Seeded from [[EcoCyc]] (v14.0)
|
Missing: with/from
|-
|

|
GO:0044457
|
cell septum part
|
PMID:9282742
|
IDA: Inferred from Direct Assay
|

|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|

|
GO:0005515
|
protein binding
|
PMID:20497333
|
IPI: Inferred from Physical Interaction
|
EcoliWiki:ftsN

|
F
|

|
complete
|-
|

|
GO:0005515
|
protein binding
|
PMID:20497333
|
IPI: Inferred from Physical Interaction
|
EcoliWiki:zapA

|
F
|

|
complete
|-
|

|
GO:0005515
|
protein binding
|
PMID:20497333
|
IPI: Inferred from Physical Interaction
|
EcoliWiki:ftsW

|
F
|

|
complete
|-
|

|
GO:0005515
|
protein binding
|
PMID:20497333
|
IPI: Inferred from Physical Interaction
|
EcoliWiki:ftsI

|
F
|

|
complete

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<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="F46ab0eb5e98e2" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
ynaE 
|

|
PMID:16606699
|
Experiment(s):EBI-1147095 
|-
|
Protein
|
rpsI 
|

|
PMID:16606699
|
Experiment(s):EBI-1147095 
|-
|
Protein
|
rraA 
|

|
PMID:16606699
|
Experiment(s):EBI-1147095 
|-
|
Protein
|
yhaJ 
|

|
PMID:16606699
|
Experiment(s):EBI-1147095 
|-
|
Protein
|
ydfK 
|

|
PMID:16606699
|
Experiment(s):EBI-1147095 
|-
|
Protein
|
rhaD 
|

|
PMID:16606699
|
Experiment(s):EBI-1147095 
|-
|
Protein
|
gadW 
|

|
PMID:16606699
|
Experiment(s):EBI-1147095 
|-
|
Protein
|
rplQ 
|

|
PMID:16606699
|
Experiment(s):EBI-1147095 

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</protect>
===Notes===

==Localization==

{{Product_localization_help}}
{| id="I46ab0eb6c3e6c" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes
|-
|
plasma membrane
|

|

|

|

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<protect></protect>

===Notes===

==Structure and Physical Properties==
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<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="C46ab0eb876b7d" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=EG11529-MONOMER at EcoCyc]
<pre>MAQRDYVRRS QPAPSRRKKS TSRKKQRNLP AVSPAMVAIA AAVLVTFIGG LYFITHHKKE
ESETLQSQKV TGNGLPPKPE ERWRYIKELE SRQPGVRAPT EPSAGGEVKT PEQLTPEQRQ
LLEQMQADMR QQPTQLVEVP WNEQTPEQRQ QTLQRQRQAQ QLAEQQRLAQ QSRTTEQSWQ
QQTRTSQAAP VQAQPRQSKP ASSQQPYQDL LQTPAHTTAQ SKPQQAAPVA RAADAPKPTA
EKKDERRWMV QCGSFRGAEQ AETVRAQLAF EGFDSKITTN NGWNRVVIGP VKGKENADST
LNRLKMAGHT NCIRLAAGG</pre>
|-
!align=left {{table heading style}} |Length
||
319
|-
!align=left {{table heading style}} |Mol. Wt
||
35.791 kDa
|-
!align=left {{table heading style}} |pI
||
10.6 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
33,460 - 33,710 (calc based on 4 Y, 5 W, and 2 C residues)

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<big>'''Domains/Motifs/Modification Sites'''</big><table>
<tr align="left" valign="top">
<td>
{{Product_domains_motifs_help}}
{| id="F46ab0eb8edc2e" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
|-
|
Domain
|
244..315
|
[http://pfam.janelia.org/family/PF05036 PF05036 Sporulation related domain]
|

|
PMID:19920124

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</td>
<td>


<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="N46ab0eb95d1c1" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=ftsN
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

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</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
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{{Product_resources_help}}
{| id="I46ab0eba51655" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

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<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="J46ab0ebabac0d" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11529-MONOMER EcoCyc:EG11529-MONOMER]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[[uniprot:P29131|UniProt:P29131]]
|

|-
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://pfam.janelia.org/protein/P29131 Pfam:P29131]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_418368 RefSeq:NP_418368]
|

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<protect></protect>
===Notes===

==Links==
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{| id="E46a896d0acbec" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

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<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]

nanS:Gene

2009-10-13T03:45:31Z

Keseler: Table edited by Keseler via TableEdit