EcoliWiki - User contributions [en]

hipA:Gene

2012-11-20T20:42:30Z

Kalyanasunds: Table edited by Kalyanasunds via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|hipA}}{{Tab On|Gene|hipA}}{{Tab|Gene Product(s)|hipA}}{{Tab|Expression|hipA}}{{Tab|Evolution|hipA}}{{Tab|On One Page|hipA}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="U46a9c883bda74" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''hipA''
|-
!align=left {{table_heading_style}} |Mnemonic
||
High persistence
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK1500, b1507, JW1500''<ref name='LIB:Riley_2006'/>, JW1500''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.13577.U46a9c883bda74&page=13577&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="S46a9c884442a5" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
34.25 minutes 
|
MG1655: 1590200..1588878 <gbrowseImage>
name=NC_000913:1588878..1590200
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10443 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|1587878|1591200|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|1588878|1590200|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10443 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 1568743..1567421 <gbrowseImage>
name=NC_012967:1567421..1568743
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|1567421|1568743|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|1567421|1568743|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 1480937..1482259 <gbrowseImage>
name=NC_012759:1480937..1482259
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|1480937|1482259|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|1480937|1482259|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 1593890..1592568 <gbrowseImage>
name=AC_000091:1592568..1593890
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|1591568|1594890|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|1592568|1593890|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 1679825..1678503 <gbrowseImage>
name=NC_010473:1678503..1679825
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|1675859|1682469|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|1675859|1682469|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.13577.S46a9c884442a5&page=13577&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="U46a9c884e82ce" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.13577.U46a9c884e82ce&page=13577&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| {{Prettytable}} id="O46a9c88536946" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
ΔhipA (Keio:JW1500)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=107580 CGSC9299]<ref name='LIB:cgsc'/>
|

|-
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0005022 hipA::Tn5KAN-2] (FB20340)
|
Insertion at nt 180 in Plus orientation
|

|

|

|
PMID:15262929
|
[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB20340]
|
contains [[pKD46]]
|-
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0005022 hipA::Tn5KAN-2] (FB20341)
|
Insertion at nt 180 in Plus orientation
|

|

|

|
PMID:15262929
|
[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB20341]
|
does not contain [[pKD46]]
|-
|
hipA7
|

|
G22S and D291A
|
Growth Phenotype
|
The hipA7 allele confers a high persistence phenotype and cold sensitivity at 20°C. The HipA7 protein is non-toxic.
|
PMID:14622409
|

|
Persisters are cells in a population that survive antibiotic treatment even though genetically they remain sensitive to the antibiotic. Cultures of wild-type cells typically contain 10-5 to 10-6 persister cells. Cultures of hipA7 cells contain 10-2 to 10-3 persister cells.
|-
|
''ΔhipA728::kan''
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:101358|CGSC:101358]]
|

|-
|
hipA7
|

|
G22S and D291A
|
presistence frequency
|
The hipA7 allele confers a high persistence phenotype.
|
PMID:6348026
|
experimental strain:HM22
|
Persisters are cells in a population that survive antibiotic treatment even though genetically they remain sensitive to the antibiotic. Cultures of wild-type cells typically contain 10-5 to 10-6 persister cells. Cultures of hipA7 cells contain 10-2 to 10-3 persister cells.
|-
|
hipA9
|

|
G22S and D291A
|
presistence frequency
|
The hipA9 allele confers a high persistence phenotype.
|
PMID:6348026
|
experimental strain:HM23
|
Persisters are cells in a population that survive antibiotic treatment even though genetically they remain sensitive to the antibiotic. Cultures of wild-type cells typically contain 10-5 to 10-6 persister cells. Cultures of hipA9 cells contain 10-2 to 10-3 persister cells.
|-
|

|

|

|

|

|

|

|

|-
|
hipA9
|

|
G22S and D291A
|
presistence frequency
|
The hipA9 allele confers a high persistence phenotype.
|
PMID:196328
|
experimental strain:HM23
|
Persisters are cells in a population that survive antibiotic treatment even though genetically they remain sensitive to the antibiotic. Cultures of wild-type cells typically contain 10-5 to 10-6 persister cells. Cultures of hipA7 cells contain 10-2 to 10-3 persister cells. Refer to figure 3.
|-
|
hipA7
|

|
G22S and D291A
|
presistence frequency
|
The hipA7 allele confers a high persistence phenotype.
|
PMID:1963289
|
experimental strain:HM22
|
Persisters are cells in a population that survive antibiotic treatment even though genetically they remain sensitive to the antibiotic. Cultures of wild-type cells typically contain 10-5 to 10-6 persister cells. Cultures of hipA7 cells contain 10-2 to 10-3 persister cells.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.13577.O46a9c88536946&page=13577&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="F4e04bcff62e03" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.13577.F4e04bcff62e03&page=13577&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="E46a9c885da6f2" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW1500
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCCCTAAACTTGTCACTTGGAT

Primer 2:CCtTTACTACCGTATTCTCGGCT
|-
|
[[:Category:Kohara_Phage:6E8|6E8]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=301 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:2A9|2A9]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=302 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:5F9|5F9]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=303 Genobase]
|
PMID:3038334
|-
|
[[yddE:Gene|zdd-235::Tn10]]
|
Linked marker
|
CAG18461 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39848 CGSC7378]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 8% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zdc-235::Tn10
|-
|
zdi-925::Tn10
|
Linked marker
|
CAG12151 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39862 CGSC7385]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zdh-925::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.13577.E46a9c885da6f2&page=13577&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="K46a9c886749a8" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10443 ECOCYC:EG10443]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG10443 EcoGene:EG10443]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=946064 GeneID:946064]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.13577.K46a9c886749a8&page=13577&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="S46a6e5f61c740" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.13577.S46a6e5f61c740&page=13577&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:hip genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

hipA:Gene

2012-11-20T20:23:17Z

Kalyanasunds: Table edited by Kalyanasunds via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|hipA}}{{Tab On|Gene|hipA}}{{Tab|Gene Product(s)|hipA}}{{Tab|Expression|hipA}}{{Tab|Evolution|hipA}}{{Tab|On One Page|hipA}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="U46a9c883bda74" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''hipA''
|-
!align=left {{table_heading_style}} |Mnemonic
||
High persistence
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK1500, b1507, JW1500''<ref name='LIB:Riley_2006'/>, JW1500''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.13577.U46a9c883bda74&page=13577&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="S46a9c884442a5" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
34.25 minutes 
|
MG1655: 1590200..1588878 <gbrowseImage>
name=NC_000913:1588878..1590200
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10443 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|1587878|1591200|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|1588878|1590200|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10443 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 1568743..1567421 <gbrowseImage>
name=NC_012967:1567421..1568743
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|1567421|1568743|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|1567421|1568743|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 1480937..1482259 <gbrowseImage>
name=NC_012759:1480937..1482259
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|1480937|1482259|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|1480937|1482259|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 1593890..1592568 <gbrowseImage>
name=AC_000091:1592568..1593890
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|1591568|1594890|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|1592568|1593890|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 1679825..1678503 <gbrowseImage>
name=NC_010473:1678503..1679825
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|1675859|1682469|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|1675859|1682469|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.13577.S46a9c884442a5&page=13577&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="U46a9c884e82ce" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.13577.U46a9c884e82ce&page=13577&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| {{Prettytable}} id="O46a9c88536946" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
ΔhipA (Keio:JW1500)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=107580 CGSC9299]<ref name='LIB:cgsc'/>
|

|-
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0005022 hipA::Tn5KAN-2] (FB20340)
|
Insertion at nt 180 in Plus orientation
|

|

|

|
PMID:15262929
|
[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB20340]
|
contains [[pKD46]]
|-
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0005022 hipA::Tn5KAN-2] (FB20341)
|
Insertion at nt 180 in Plus orientation
|

|

|

|
PMID:15262929
|
[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB20341]
|
does not contain [[pKD46]]
|-
|
hipA7
|

|
G22S and D291A
|
Growth Phenotype
|
The hipA7 allele confers a high persistence phenotype and cold sensitivity at 20°C. The HipA7 protein is non-toxic.
|
PMID:14622409
|

|
Persisters are cells in a population that survive antibiotic treatment even though genetically they remain sensitive to the antibiotic. Cultures of wild-type cells typically contain 10-5 to 10-6 persister cells. Cultures of hipA7 cells contain 10-2 to 10-3 persister cells.
|-
|
''ΔhipA728::kan''
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:101358|CGSC:101358]]
|

|-
|

|

|

|

|

|

|

|

|-
|
hipA7
|

|
G22S and D291A
|
presistence frequency
|
The hipA7 allele confers a high persistence phenotype.
|
PMID:6348026
|
experimental strain:HM22
|
Persisters are cells in a population that survive antibiotic treatment even though genetically they remain sensitive to the antibiotic. Cultures of wild-type cells typically contain 10-5 to 10-6 persister cells. Cultures of hipA7 cells contain 10-2 to 10-3 persister cells.
|-
|
hipA9
|

|
G22S and D291A
|
presistence frequency
|
The hipA9 allele confers a high persistence phenotype.
|
PMID:6348026
|
experimental strain:HM23
|
Persisters are cells in a population that survive antibiotic treatment even though genetically they remain sensitive to the antibiotic. Cultures of wild-type cells typically contain 10-5 to 10-6 persister cells. Cultures of hipA9 cells contain 10-2 to 10-3 persister cells.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.13577.O46a9c88536946&page=13577&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="F4e04bcff62e03" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.13577.F4e04bcff62e03&page=13577&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
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{{Gene_resources_help}}
{| id="E46a9c885da6f2" class=" tableEdit Gene_resource_table"
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!|Resource!!Resource Type!!Source!!Notes/Reference
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JW1500
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Plasmid clone
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[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
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PMID:16769691

Status:Clone OK

Primer 1:GCCCCTAAACTTGTCACTTGGAT

Primer 2:CCtTTACTACCGTATTCTCGGCT
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[[:Category:Kohara_Phage:6E8|6E8]]
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Kohara Phage
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[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=301 Genobase]
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PMID:3038334
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[[:Category:Kohara_Phage:2A9|2A9]]
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Kohara Phage
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[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=302 Genobase]
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PMID:3038334
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[[:Category:Kohara_Phage:5F9|5F9]]
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Kohara Phage
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[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=303 Genobase]
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PMID:3038334
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[[yddE:Gene|zdd-235::Tn10]]
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Linked marker
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CAG18461 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39848 CGSC7378]<ref name='LIB:cgsc'/>
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est. P1 cotransduction: 8% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zdc-235::Tn10
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zdi-925::Tn10
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Linked marker
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CAG12151 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39862 CGSC7385]<ref name='LIB:cgsc'/>
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est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zdh-925::Tn10

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===Notes===

==Accessions in Other Databases==
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{{Gene_accessions_help}}
{| id="K46a9c886749a8" class=" tableEdit Gene_accessions_table"
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!|Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10443 ECOCYC:EG10443]
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Escherichia coli str. K-12 substr. MG1655
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[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
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[http://ecogene.org/geneinfo.php?eg_id=EG10443 EcoGene:EG10443]
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Escherichia coli str. K-12 substr. MG1655
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[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
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[http://www.ncbi.nlm.nih.gov/gene?term=946064 GeneID:946064]
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Escherichia coli str. K-12 substr. MG1655

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===Notes===

==Links==
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!|Name!!URL!!Comments

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==References==
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{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:hip genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]