EcoliWiki - User contributions [en]

gyrB:Gene

2012-10-25T17:21:18Z

KSharma: Table edited by KSharma via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|gyrB}}{{Tab On|Gene|gyrB}}{{Tab|Gene Product(s)|gyrB}}{{Tab|Expression|gyrB}}{{Tab|Evolution|gyrB}}{{Tab|On One Page|gyrB}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="U46a9fc9fa216f" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''gyrB''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Gyrase
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK3691, b3699, JW5625, Cou, himB, hisU, nalC, nalD, pcbA, parA, hopA, pcpA''<ref name='LIB:Riley_2006'/>, acrB, pcpA''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.U46a9fc9fa216f&page=17957&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="J46a9fca030db8" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
83.53 minutes, 83.53 minutes 
|
MG1655: 3878142..3875728 <gbrowseImage>
name=NC_000913:3875728..3878142
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10424 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|3874728|3879142|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|3875728|3878142|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10424 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 3840480..3838066 <gbrowseImage>
name=NC_012967:3838066..3840480
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|3838066|3840480|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|3838066|3840480|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 3764061..3766475 <gbrowseImage>
name=NC_012759:3764061..3766475
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|3764061|3766475|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|3764061|3766475|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3760296..3762710 <gbrowseImage>
name=AC_000091:3760296..3762710
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|3759296|3763710|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|3760296|3762710|FASTA Dump}}

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|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.J46a9fca030db8&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="U46a9fca0e9109" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
3875731
|
Edman degradation
|
PMID:3029692 
|

|- class="tableEdit_footer"
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|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| {{Prettytable}} id="K46a9fca13ef43" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
gyrBD426N
|

|
D426N
|

|
(in nal-24, nal-102, nal-103, nal- 107, nal-108, nal-111, nal-114, en-2 and en-5 mutants; resistant to nalidixic acid and to enoxacin)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES6 UniProt:P0AES6]
|-
|
gyrBK447E
|

|
K447E
|

|
(in nal-31, nal-109, nal-115 and nal-120 mutants; resistant to nalidixic acid)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES6 UniProt:P0AES6]
|-
|
gyrBW751R
|

|
W751R
|

|
(in B17 resistant mutant)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES6 UniProt:P0AES6]
|-
|
gyrBSR759RC
|

|
SR759RC
|

|
(in acriflavine susceptible mutant)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES6 UniProt:P0AES6]
|-
|
''gyrB41''(Const)
|

|

|

|

|

|
[[cgscmutation:6633|CGSC:6633]]
|

|-
|
''gyrB226''
|

|

|

|

|

|
[[cgscmutation:5052|CGSC:5052]]
|

|-
|
''gyrB225''
|

|

|

|

|

|
[[cgscmutation:7206|CGSC:7206]]
|

|-
|
''gyrB204''
|

|

|

|

|

|
[[cgscmutation:9714|CGSC:9714]]
|

|-
|
''gyrB203''(ts)
|

|

|

|
temperature sensitive
|

|
[[cgscmutation:12298|CGSC:12298]]
|

|-
|
''gyrB221''(CouR)
|

|

|

|
coumermycin resistant
|

|
[[cgscmutation:12299|CGSC:12299]]
|

|-
|
gyrB234(ts)
|

|

|
Cell Shape
|
at permissive temperature (30°C), the average cell volume is larger than the gyrB+ parent (LE234)
|
PMID:94144
|

|
Strain LE316
|-
|
''nalD'' in strain AB1157-81
|

|

|
Resistant to
|
Mutant is resistant to Nalidixic acid (NAL) at 37C and sensitive at 30C
|
PMID:3906038
|
Strain: AB1157-81
|
Figure 3
|-
|
gyrB234(ts)
|

|

|
Resistant to
|
Resistant to chlorobiocin (50 ug/ml) (at permissive growth temperatures)
|
PMID:94144
|

|
Strain LE316, parental strain LE234
|-
|
gyrB234(ts)
|

|

|
Growth Phenotype
|
Temperature-sensitive growth, the plating efficiency at 42°C is less than 10-7 that of the gyrB{ parental strain LE234
|
PMID:94144
|

|
Strain LE316, parental strain is LE234
|-
|
gyrB234(ts)
|

|

|
Resistant to
|
Coumermycin A1 resistant (at permissive growth temperatures)
|
PMID:94144
|

|
Strain LE316, parental strain LE234
|-
|
Multicopy ''gyrB'' in strain RYC1010
|

|

|
Resistant to
|
Increased resistance towards coumermycin A1
|
PMID:1656457
|

|
Plasmid pCID549 was used to increase gene dosage of gyrB causing increased resistance toward coumermycin A1.

|- class="tableEdit_footer"
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|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="S4e04bcc9ad9c2" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.17957.S4e04bcc9ad9c2&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="O46a9fca203146" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW5625
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:cloned as old JW

Primer 1:GCCTCGAATTCTTATGACTCCTC

Primer 2:CCAATATCGATATTCGCCGCTTT
|-
|
[[:Category:Kohara_Phage:3C10|3C10]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=565 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:3D1|3D1]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=566 Genobase]
|
PMID:3038334
|-
|
zid-501::Tn10
|
Linked marker
|
CAG18499 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38945 CGSC7458]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 95% <ref name='LIB:Nichols_linked_Tn'/>
|-
|
[[rbsA:Gene|rbsD296::Tn10]]
|
Linked marker
|
CAG18501 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40333 CGSC7460]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 7% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zie-296::Tn10

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|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.O46a9fca203146&page=17957&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="H46a9fca2a22e5" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10424 ECOCYC:EG10424]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG10424 EcoGene:EG10424]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=948211 GeneID:948211]
|
Escherichia coli str. K-12 substr. MG1655

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|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="S46a716dc9e48a" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.S46a716dc9e48a&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes not in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:gyr genes]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

gyrB:Gene

2012-10-25T17:19:06Z

KSharma: Table edited by KSharma via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|gyrB}}{{Tab On|Gene|gyrB}}{{Tab|Gene Product(s)|gyrB}}{{Tab|Expression|gyrB}}{{Tab|Evolution|gyrB}}{{Tab|On One Page|gyrB}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="U46a9fc9fa216f" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''gyrB''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Gyrase
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK3691, b3699, JW5625, Cou, himB, hisU, nalC, nalD, pcbA, parA, hopA, pcpA''<ref name='LIB:Riley_2006'/>, acrB, pcpA''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.U46a9fc9fa216f&page=17957&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="J46a9fca030db8" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
83.53 minutes, 83.53 minutes 
|
MG1655: 3878142..3875728 <gbrowseImage>
name=NC_000913:3875728..3878142
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10424 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|3874728|3879142|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|3875728|3878142|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10424 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 3840480..3838066 <gbrowseImage>
name=NC_012967:3838066..3840480
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|3838066|3840480|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|3838066|3840480|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 3764061..3766475 <gbrowseImage>
name=NC_012759:3764061..3766475
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|3764061|3766475|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|3764061|3766475|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3760296..3762710 <gbrowseImage>
name=AC_000091:3760296..3762710
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|3759296|3763710|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|3760296|3762710|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.J46a9fca030db8&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="U46a9fca0e9109" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
3875731
|
Edman degradation
|
PMID:3029692 
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.U46a9fca0e9109&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| {{Prettytable}} id="K46a9fca13ef43" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
gyrBD426N
|

|
D426N
|

|
(in nal-24, nal-102, nal-103, nal- 107, nal-108, nal-111, nal-114, en-2 and en-5 mutants; resistant to nalidixic acid and to enoxacin)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES6 UniProt:P0AES6]
|-
|
gyrBK447E
|

|
K447E
|

|
(in nal-31, nal-109, nal-115 and nal-120 mutants; resistant to nalidixic acid)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES6 UniProt:P0AES6]
|-
|
gyrBW751R
|

|
W751R
|

|
(in B17 resistant mutant)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES6 UniProt:P0AES6]
|-
|
gyrBSR759RC
|

|
SR759RC
|

|
(in acriflavine susceptible mutant)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES6 UniProt:P0AES6]
|-
|
''gyrB41''(Const)
|

|

|

|

|

|
[[cgscmutation:6633|CGSC:6633]]
|

|-
|
''gyrB226''
|

|

|

|

|

|
[[cgscmutation:5052|CGSC:5052]]
|

|-
|
''gyrB225''
|

|

|

|

|

|
[[cgscmutation:7206|CGSC:7206]]
|

|-
|
''gyrB204''
|

|

|

|

|

|
[[cgscmutation:9714|CGSC:9714]]
|

|-
|
''gyrB203''(ts)
|

|

|

|
temperature sensitive
|

|
[[cgscmutation:12298|CGSC:12298]]
|

|-
|
''gyrB221''(CouR)
|

|

|

|
coumermycin resistant
|

|
[[cgscmutation:12299|CGSC:12299]]
|

|-
|
gyrB234(ts)
|

|

|
Cell Shape
|
at permissive temperature (30°C), the average cell volume is larger than the gyrB+ parent (LE234)
|
PMID:94144
|

|
Strain LE316
|-
|
''nalD'' in strain AB1157-81
|

|

|
Resistant to
|
Mutant is resistant to Nalidixic acid (NAL) at 37C and sensitive at 30C
|
PMID:3906038
|
Strain: AB1157-81
|
Figure 3
|-
|
gyrB234(ts)
|

|

|
Resistant to
|
Resistant to chlorobiocin (50 ug/ml) (at permissive growth temperatures)
|
PMID:94144
|

|
Strain LE316, parental strain LE234
|-
|
gyrB234(ts)
|

|

|
Growth Phenotype
|
Temperature-sensitive growth, the plating efficiency at 42°C is less than 10-7 that of the gyrB{ parental strain LE234
|
PMID:94144
|

|
Strain LE316, parental strain is LE234
|-
|
gyrB234(ts)
|

|

|
Resistant to
|
Coumermycin A1 resistant (at permissive growth temperatures)
|
PMID:94144
|

|
Strain LE316, parental strain LE234
|-
|
Multicopy ''gyrB'' in strain RYC1010
|

|

|
Resistant to
|
Increased resistance towards coumermycin A1
|
PMID:1656457
|

|
The use of plasmid pCID549 was used to increase gene dosage of gyrB causing increased resistance toward coumermycin A1.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.K46a9fca13ef43&page=17957&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
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<protect>
{{Genetic_interaction_help}}
{| id="S4e04bcc9ad9c2" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.17957.S4e04bcc9ad9c2&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
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{{Gene_resources_help}}
{| id="O46a9fca203146" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW5625
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:cloned as old JW

Primer 1:GCCTCGAATTCTTATGACTCCTC

Primer 2:CCAATATCGATATTCGCCGCTTT
|-
|
[[:Category:Kohara_Phage:3C10|3C10]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=565 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:3D1|3D1]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=566 Genobase]
|
PMID:3038334
|-
|
zid-501::Tn10
|
Linked marker
|
CAG18499 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38945 CGSC7458]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 95% <ref name='LIB:Nichols_linked_Tn'/>
|-
|
[[rbsA:Gene|rbsD296::Tn10]]
|
Linked marker
|
CAG18501 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40333 CGSC7460]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 7% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zie-296::Tn10

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|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.O46a9fca203146&page=17957&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
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{{Gene_accessions_help}}
{| id="H46a9fca2a22e5" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10424 ECOCYC:EG10424]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG10424 EcoGene:EG10424]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=948211 GeneID:948211]
|
Escherichia coli str. K-12 substr. MG1655

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|}


<protect></protect>
===Notes===

==Links==
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{| id="S46a716dc9e48a" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.S46a716dc9e48a&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
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{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes not in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:gyr genes]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]