ftsI:Gene

2011-08-05T19:18:01Z

Jwade: Table edited by Jwade via TableEdit

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<noinclude>{{TabsTop}}
{{Tab|Quickview|ftsI}}{{Tab On|Gene|ftsI}}{{Tab|Gene Product(s)|ftsI}}{{Tab|Expression|ftsI}}{{Tab|Evolution|ftsI}}{{Tab|On One Page|ftsI}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
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{{Gene_nomenclature_help}}
{| id="B46a9a81a408f5" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''ftsI''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Filamentation, temperature sensitive
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK0085, b0084, JW0082, pbpB, sep''<ref name='LIB:Riley_2006'/>

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</protect>
===Notes===

==Location(s) and DNA Sequence==
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<protect>

{{Gene_location_help}}
{| id="J46a9a81ab942a" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
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1.97 minutes 
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MG1655: 91413..93179 <gbrowseImage>
name=NC_000913:91413..93179
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10341 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|90413|94179|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|ecoli|NC_000913|91413|93179|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10341 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

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NC_012967: 94217..95983 <gbrowseImage>
name=NC_012967:94217..95983
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|94217|95983|GBrowse (REL606)}}
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{{GBrowseFastaLink|REL606|NC_012967|94217|95983|FASTA Dump}}
|-
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[[BW2952]]
|

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NC_012759: 91412..93178 <gbrowseImage>
name=NC_012759:91412..93178
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|012759|91412|NC_93178|GBrowse (BW2952)}}
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{{GBrowseFastaLink|BW2952|012759|91412|NC_93178|FASTA Dump}}
|-
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W3110
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W3110: 91413..93179 <gbrowseImage>
name=AC_000091:91413..93179
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|ecoli_W3110|AC_000091|90413|94179|GBrowse(W3110)}}
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{{GBrowseFastaLink|ecoli_W3110|AC_000091|91413|93179|FASTA Dump}}
|-
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[[DH10B]]
|

|
DH10B: 65517..67283 <gbrowseImage>
name=NC_010473:65517..67283
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|ecoli_DH10B|NC_010473|61985|70815|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|ecoli_DH10B|NC_010473|61985|70815|FASTA Dump}}

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</protect>
===Notes===

==Sequence Features==
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{{Gene_sequence_features_help}}
{| id="B46a9a81b618a8" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

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<protect></protect>
====Notes====

==Alleles and Phenotypes==
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{{Gene_alleles_help}}
{| {{Prettytable}} id="U46a9a81ba1dec" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
ftsIS307A,T
|

|
S307A,T
|

|
Unable to bind penicillin
|

|

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seeded from [http://www.uniprot.org/uniprot/P0AD68 UniProt:P0AD68]
|-
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ftsIS307C
|

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S307C
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Still able to bind penicillin
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|

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seeded from [http://www.uniprot.org/uniprot/P0AD68 UniProt:P0AD68]
|-
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ftsIN361S
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N361S
|

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In PBPBR1; obtained after selection for increased resistance to cephalexin, causes a change in the shape of the cell: The polar caps are pointed
|

|

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seeded from [http://www.uniprot.org/uniprot/P0AD68 UniProt:P0AD68]
|-
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''ftsI23''(ts)
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TAC to GAC
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Y380D
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Growth Phenotype
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at non-permissive temperature filaments with indented morphology were formed
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PMID:8682793
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[[cgscmutation:91088|CGSC:91088]]
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|-
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''ftsI2158''(ts)
|

|

|

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temperature sensitive
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[[cgscmutation:10211|CGSC:10211]]
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|-
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pbpB2158
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|

|

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temperature shift to 42 C caused blunt constrictions
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PMID:3280547
|

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a shift back to permissive temperature results in aberrant constrictions and formation of minicell-like cells

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<protect></protect>
===Notes===

==Genetic Interactions==
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<protect>
{{Genetic_interaction_help}}
{| id="M4e04bb9d19864" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

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</protect>


===Notes===

==Genetic Resources==
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{{Gene_resources_help}}
{| id="S46a9a81c49c6d" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
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JW0082
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Plasmid clone
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[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
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PMID:16769691

Status:Clone OK

Primer 1:GCCAAAGCAGCGGCGAAAACGCA

Primer 2:CCCGATCTGCCACCTGTCCCCTC
|-
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leuO3051::Tn10
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Linked marker
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CAG12095 = [http://cgsc2.biology.yale.edu/Strain.php?ID=37901 CGSC7324]<ref name='LIB:cgsc'/>
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est. P1 cotransduction: 77% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zab-3051::Tn10 nnnThe start of leuO was reannotated by Riley et al. (2006).
|-
|
[[yadC:Gene|zad-220::Tn10]]
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Linked marker
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CAG12025 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38011 CGSC7326]<ref name='LIB:cgsc'/>
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est. P1 cotransduction: 6% <ref name='LIB:Nichols_linked_Tn'/>

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<protect></protect>
===Notes===

==Accessions in Other Databases==
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{{Gene_accessions_help}}
{| id="R46a9a81cd287e" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10341 EcoCyc:EG10341]
|

|-
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[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
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[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB0337 EchoBASE:EB0337]
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|-
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[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
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[http://chase.ou.edu/macro/searchlink.php?bnum=b0084 EcoliGenExpDB:b0084]
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|-
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[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])
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[http://BioCyc.org/ECOL199310/new-image?object=C0102 ECOL199310CYC:C0102]
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|-
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[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
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[http://ecogene.org/geneinfo.php?eg_id=EG10341 EcoGene:EG10341]
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|-
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[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
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[http://BioCyc.org/ECOO157/new-image?object=FTSI ECOO157CYC:FTSI]
|

|-
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[http://cgsc.biology.yale.edu CGSC] ([[CGSC|EcoliWiki Page]])
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[http://cgsc.biology.yale.edu/cgi-bin/sybgw/cgsc/Site/423 CGSC:423]
|

|-
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[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
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[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0000309&formSubmitReturn=1 ASAP:ABE-0000309]
|

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===Notes===

==Links==
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{| id="C46a675523915e" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

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<noinclude><protect>
==References==
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{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes not in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:fts genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

User:Jwade

2010-09-23T00:46:12Z

Jwade: Table edited by Jwade via TableEdit

Click "edit table" in the last row to add information to the table. Click [[Help:Adding_your_information|here]] to find out how to add more information to your user page.



{| id="U4c9aa012a6fa4" class=" tableEdit User_info_table"

|-
!align=left |Name (Last, First)
||
Wade, Joe
|-
!align=left |Organization
||
Wadsworth Center, NYS Department of Health / University at Albany, SUNY
|-
!align=left |Position
||
Research Scientist / Assistant Professor
|-
!align=left |Address
||

|-
!align=left |Contact Info
||
*jwade#wadsworth.org
|-
!align=left |Website(s)
||
http://www.wadelab.org/
|-
!align=left |Interests
||
Gene regulation, transcription, non-coding RNAs
|-
!align=left |Genes
||

|-
!align=left |Lab members
||

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==References==
{{RefHelp}}
<references/>

stpA:Quickview

2008-05-15T16:26:58Z

Jwade: /* Notes */

EcoliWiki - User contributions [en]

ftsI:Gene

User:Jwade

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