EcoliWiki - User contributions [en]

Bactibase

2014-04-23T02:17:20Z

Joncrz: Table edited by Joncrz via TableEdit

{{Pagetop}} 
{{See|Help:Databases|databases}}

<protect>

{| {{Prettytable}} width='30%' align="right" id="X53572126c6079" class=" tableEdit Database_table"

|-
!align=left {{table heading style}} |Link/URL:
||
http://bactibase.pfba-lab-tun.org/toolsui.php?do=hmm
|-
!align=left {{table heading style}} |What:
||
is a data repository of bacteriocin natural antimicrobial peptides
|-
!align=left {{table heading style}} |Who:
||
Functional Proteomics & Alimentary Bio-preservation Research Unit at Institute of Applied Biological Sciences Tunis (ISSBAT)
|-
!align=left {{table heading style}} |Updates:
||

|-
!align=left {{table heading style}} |Upcoming events:
||

|-
!align=left {{table heading style}} |Web Services:
||

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.183484.X53572126c6079&page=183484&pagename={{FULLPAGENAMEE}}&type=1&template=Database_table edit table] ||
|}
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==About {{PAGENAME}}==
''Add general information here''
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[[Category:Databases]]

Bactibase

2014-04-23T02:10:46Z

Joncrz:

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{{See|Help:Databases|databases}}

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{| {{Prettytable}} width='30%' align="right" id="X53572126c6079" class=" tableEdit Database_table"

|-
!align=left {{table heading style}} |Link/URL:
|-
!align=left {{table heading style}} |What:
|-
!align=left {{table heading style}} |Who:
|-
!align=left {{table heading style}} |Updates:
|-
!align=left {{table heading style}} |Upcoming events:
|-
!align=left {{table heading style}} |Web Services:

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.183484.X53572126c6079&page=183484&pagename={{FULLPAGENAMEE}}&type=1&template=Database_table edit table]
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==About {{PAGENAME}}==
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==External Links==
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Bactibase

2014-04-23T02:08:30Z

Joncrz: New Template:Database Page

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==About {{PAGENAME}}==
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[[Category:Databases]]

pncA:Gene

2014-02-01T01:06:15Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|pncA}}{{Tab On|Gene|pncA}}{{Tab|Gene Product(s)|pncA}}{{Tab|Expression|pncA}}{{Tab|Evolution|pncA}}{{Tab|On One Page|pncA}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="Q46a9ce7c377de" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''pncA''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Pyridine nucleotide cycle
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK1766, b1768, JW1757, nam, ydjB''<ref name='LIB:Riley_2006'/>, ydjB''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14107.Q46a9ce7c377de&page=14107&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="H46a9ce7cb3142" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
39.87 minutes 
|
MG1655: 1849911..1850552 <gbrowseImage>
name=NC_000913:1849911..1850552
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG11135 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|1848911|1851552|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|1849911|1850552|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG11135 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 1829115..1829756 <gbrowseImage>
name=NC_012967:1829115..1829756
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|1829115|1829756|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|1829115|1829756|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 1741970..1742611 <gbrowseImage>
name=NC_012759:1741970..1742611
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|1741970|1742611|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|1741970|1742611|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 1853601..1854242 <gbrowseImage>
name=NC_007779:1853601..1854242
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|NC_007779|1852601|1855242|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|NC_007779|1853601|1854242|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 1940482..1941123 <gbrowseImage>
name=NC_010473:1940482..1941123
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|1939200|1942405|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|1939200|1942405|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14107.H46a9ce7cb3142&page=14107&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="S46a9ce7d65c57" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14107.S46a9ce7d65c57&page=14107&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="V46a9ce7da9410" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
ΔpncA (Keio:JW1757)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=107758 CGSC9477]<ref name='LIB:cgsc'/>
|

|-
|
ΔydjB::kan
|
deletion
|

|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|N-Acetyl-D-glucosamine]]
|
PMID:16095938
|

|

|-
|
ΔydjB::kan
|
deletion
|

|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|Acetate]]
|
PMID:16095938
|

|

|-
|
ΔydjB::kan
|
deletion
|

|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|L-Aspartate]]
|
PMID:16095938
|

|

|-
|
''pncA1''
|

|

|

|

|

|
[[cgscmutation:5567|CGSC:5567]]
|

|-
|
''pncA20''
|

|

|

|

|

|
[[cgscmutation:39483|CGSC:39483]]
|

|-
|
''ΔpncA766::kan''
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:102386|CGSC:102386]]
|

|-
|
''pncA -''
|

|

|
Resistant to
|
Resistant to 6-amino-nicotinamide
|
CURRENT MICROBIOLOGY
Volume 4, Number 1 (1980), 31-35, DOI: 10.1007/BF02602888
|
Strain: UTH7095
|
table 1
|-
|
''pncA -''
|

|

|
Resistant to
|
Resistant to 6-amino-nicotinamide
|
PMID:780339
|

|

|-
|
''pncA''+
|

|

|
Growth Phenotype
|
Growth on media with nicotinamide as sole nitrogen source.
|
PMID:4399474
|
Mutant strain: W3889-''nam11''
|
Table 4

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|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14107.V46a9ce7da9410&page=14107&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="H4e04c138ecb30" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.14107.H4e04c138ecb30&page=14107&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="W46a9ce7e5b451" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW1757
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCCCCCCTCGCGCCCTGTTACT

Primer 2:CCgCCCTGTGTCTCTTCCCAGTC
|-
|
[[:Category:Kohara_Phage:12H7|12H7]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=329 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:3E12|3E12]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=330 Genobase]
|
PMID:3038334
|-
|
[[ynjB:Gene|zdj-276::Tn10]]
|
Linked marker
|
CAG18464 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39972 CGSC7387]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 54% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zdi-276::Tn10
|-
|
[[yeaI:Gene|zea-225::Tn10]]
|
Linked marker
|
CAG18465 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39973 CGSC7388]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 49% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zdj-225::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14107.W46a9ce7e5b451&page=14107&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="M46a9ce7eebf7f" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[[EcoCyc]]
|
EcoCyc:EG11135
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG11135
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120001119
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=946276 GeneID:946276]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[[EchoBASE]]
|
EchoBASE:EB1125
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0005891
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14107.M46a9ce7eebf7f&page=14107&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="X46a6ebdf8f240" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.14107.X46a6ebdf8f240&page=14107&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:pnc genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

murE:Gene

2013-11-09T00:27:23Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|murE}}{{Tab On|Gene|murE}}{{Tab|Gene Product(s)|murE}}{{Tab|Expression|murE}}{{Tab|Evolution|murE}}{{Tab|On One Page|murE}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="Q46a9a8204f0f9" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''murE''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Murein
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK0086, b0085, JW0083''<ref name='LIB:Riley_2006'/>, JW0083''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10749.Q46a9a8204f0f9&page=10749&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="L46a9a820c781e" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
2.01 minutes 
|
MG1655: 93166..94653 <gbrowseImage>
name=NC_000913:93166..94653
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10621 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|92166|95653|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|93166|94653|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10621 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 95970..97457 <gbrowseImage>
name=NC_012967:95970..97457
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|95970|97457|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|95970|97457|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 93165..94652 <gbrowseImage>
name=NC_012759:93165..94652
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|93165|94652|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|93165|94652|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 93166..94653 <gbrowseImage>
name=NC_007779:93166..94653
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|NC_007779|92166|95653|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|NC_007779|93166|94653|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 67270..68757 <gbrowseImage>
name=NC_010473:67270..68757
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|64296|71731|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|64296|71731|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10749.L46a9a820c781e&page=10749&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="L46a9a8216f50d" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
93169
|
Edman degradation
|
PMID:2198024 PMID:2269304 
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10749.L46a9a8216f50d&page=10749&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="N46a9a821af8dc" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
murEA495S
|

|
A495S
|

|
(in murE1)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P22188 UniProt:P22188]
|-
|
murEE344K
|

|
E344K
|

|
(in murE1)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P22188 UniProt:P22188]
|-
|
''murE1''
|

|

|

|

|

|
[[cgscmutation:9851|CGSC:9851]]
|

|-
|
''ispA Pxyl-murE-B''
|

|

|
Growth Phenotype
|
repression of the murE-B operon allowed vigorous L-form growth.
|
PMID:23452849
|
Mutant Strain: LR2
|
Repression in Figure 2A

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10749.N46a9a821af8dc&page=10749&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="X4e04bfbbda90e" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.10749.X4e04bfbbda90e&page=10749&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="R46a9a8225776b" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW0083
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCGCAGATCGTAATTTGCGCGA

Primer 2:CCTGCAATCACCCCCAGCAGACG
|-
|
[[:Category:Kohara_Phage:6C1|6C1]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=109 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:6F3|6F3]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=110 Genobase]
|
PMID:3038334
|-
|
leuO3051::Tn10
|
Linked marker
|
CAG12095 = [http://cgsc2.biology.yale.edu/Strain.php?ID=37901 CGSC7324]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 72% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zab-3051::Tn10 nnnThe start of leuO was reannotated by Riley et al. (2006).
|-
|
[[yadC:Gene|zad-220::Tn10]]
|
Linked marker
|
CAG12025 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38011 CGSC7326]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 7% <ref name='LIB:Nichols_linked_Tn'/>

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10749.R46a9a8225776b&page=10749&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="A46a9a822e0365" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[[EcoCyc]]
|
EcoCyc:EG10621
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG10621
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=944791 GeneID:944791]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120000614
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB0616
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0000311
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10749.A46a9a822e0365&page=10749&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="J46a675585ac9d" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10749.J46a675585ac9d&page=10749&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes not in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:mur genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

PMID:23452849

2013-11-09T00:26:53Z

Joncrz: Fill PMID: Page!

{{RightTOC}}


{| id="F527d814c9c87b" class=" tableEdit PMID_info_table"

|-
!align=left |Citation
||
'''Mercier, R, Kawai, Y and Errington, J''' (2013) Excess membrane synthesis drives a primitive mode of cell proliferation. ''Cell'' '''152''':997-1007
|-
!align=left |Abstract
||
The peptidoglycan cell wall is a hallmark of the bacterial subkingdom. Surprisingly, many modern bacteria retain the ability to switch into a wall-free state called the L-form. L-form proliferation is remarkable in being independent of the normally essential FtsZ-based division machinery and in occurring by membrane blebbing and tubulation. We show that mutations leading to excess membrane synthesis are sufficient to drive L-form division in Bacillus subtilis. Artificially increasing the cell surface area to volume ratio in wild-type protoplasts generates similar shape changes and cell division. Our findings show that simple biophysical processes could have supported efficient cell proliferation during the evolution of early cells and provide an extant biological model for studying this problem.
|-
!align=left |Links
||
[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=23452849 PubMed]
Online version:[http://dx.doi.org/10.1016/j.cell.2013.01.043 10.1016/j.cell.2013.01.043]
|-
!align=left |Keywords
||
Bacillus subtilis/cytology; Bacillus subtilis/metabolism; Bacterial Proteins/genetics; Bacterial Proteins/metabolism; Cell Division; Cell Membrane/metabolism; Cell Proliferation; Cell Wall/metabolism; Fatty Acid Synthetase Complex/genetics; Fatty Acid Synthetase Complex/metabolism; L Forms/cytology; L Forms/metabolism; Malonyl Coenzyme A/metabolism; Membrane Proteins/genetics; Membrane Proteins/metabolism; Peptidoglycan/metabolism; Polymorphism, Single Nucleotide; Protoplasts/metabolism

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.183379.F527d814c9c87b&page=183379&pagename={{FULLPAGENAMEE}}&type=1&template=PMID_info_table edit table] ||
|}


==Significance {{HelpIcon|Help:Literature}} ==
{{LitSignificance}}

== Useful Materials and Methods {{HelpIcon|Help:Literature}}==
{{LitMaterials}}

==Annotations {{HelpIcon|Help:Literature}}==
<annotationlinks/>

==EcoliWiki Links {{HelpIcon|Help:Literature}} ==
{{LitLinks}}

==See also==

==References==
{{RefHelp}}
<references/>

PMID:23452849

2013-11-09T00:26:52Z

Joncrz: New PMID: Page!

murE:Gene

2013-11-09T00:26:02Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|murE}}{{Tab On|Gene|murE}}{{Tab|Gene Product(s)|murE}}{{Tab|Expression|murE}}{{Tab|Evolution|murE}}{{Tab|On One Page|murE}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="Q46a9a8204f0f9" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''murE''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Murein
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK0086, b0085, JW0083''<ref name='LIB:Riley_2006'/>, JW0083''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10749.Q46a9a8204f0f9&page=10749&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="L46a9a820c781e" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
2.01 minutes 
|
MG1655: 93166..94653 <gbrowseImage>
name=NC_000913:93166..94653
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10621 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|92166|95653|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|93166|94653|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10621 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 95970..97457 <gbrowseImage>
name=NC_012967:95970..97457
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|95970|97457|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|95970|97457|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 93165..94652 <gbrowseImage>
name=NC_012759:93165..94652
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|93165|94652|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|93165|94652|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 93166..94653 <gbrowseImage>
name=NC_007779:93166..94653
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|NC_007779|92166|95653|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|NC_007779|93166|94653|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 67270..68757 <gbrowseImage>
name=NC_010473:67270..68757
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|64296|71731|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|64296|71731|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10749.L46a9a820c781e&page=10749&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="L46a9a8216f50d" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
93169
|
Edman degradation
|
PMID:2198024 PMID:2269304 
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10749.L46a9a8216f50d&page=10749&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="N46a9a821af8dc" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
murEA495S
|

|
A495S
|

|
(in murE1)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P22188 UniProt:P22188]
|-
|
murEE344K
|

|
E344K
|

|
(in murE1)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P22188 UniProt:P22188]
|-
|
''murE1''
|

|

|

|

|

|
[[cgscmutation:9851|CGSC:9851]]
|

|-
|
''ispA Pxyl-murE-B"
|

|

|
Growth Phenotype
|
repression of the murE-B operon allowed vigorous L-form growth.
|
PMID:23452849
|
Mutant Strain: LR2
|
Repression in Figure 2A

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10749.N46a9a821af8dc&page=10749&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="X4e04bfbbda90e" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.10749.X4e04bfbbda90e&page=10749&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="R46a9a8225776b" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW0083
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCGCAGATCGTAATTTGCGCGA

Primer 2:CCTGCAATCACCCCCAGCAGACG
|-
|
[[:Category:Kohara_Phage:6C1|6C1]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=109 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:6F3|6F3]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=110 Genobase]
|
PMID:3038334
|-
|
leuO3051::Tn10
|
Linked marker
|
CAG12095 = [http://cgsc2.biology.yale.edu/Strain.php?ID=37901 CGSC7324]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 72% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zab-3051::Tn10 nnnThe start of leuO was reannotated by Riley et al. (2006).
|-
|
[[yadC:Gene|zad-220::Tn10]]
|
Linked marker
|
CAG12025 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38011 CGSC7326]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 7% <ref name='LIB:Nichols_linked_Tn'/>

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10749.R46a9a8225776b&page=10749&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="A46a9a822e0365" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[[EcoCyc]]
|
EcoCyc:EG10621
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG10621
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=944791 GeneID:944791]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120000614
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB0616
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0000311
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10749.A46a9a822e0365&page=10749&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="J46a675585ac9d" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10749.J46a675585ac9d&page=10749&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes not in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:mur genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

lacY:Gene

2013-07-12T23:14:13Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|lacY}}{{Tab On|Gene|lacY}}{{Tab|Gene Product(s)|lacY}}{{Tab|Expression|lacY}}{{Tab|Evolution|lacY}}{{Tab|On One Page|lacY}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="F46a9adbd8fb54" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''lacY''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Lactose
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK0340, b0343, JW0334''<ref name='LIB:Riley_2006'/>, JW0334''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11257.F46a9adbd8fb54&page=11257&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="R46a9adbe1491e" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
7.78 minutes 
|
MG1655: 362403..361150 <gbrowseImage>
name=NC_000913:361150..362403
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10526 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|360150|363403|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|361150|362403|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10526 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 335735..334482 <gbrowseImage>
name=NC_012967:334482..335735
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|334482|335735|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|334482|335735|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 4174500..4175753 <gbrowseImage>
name=NC_012759:4174500..4175753
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|4174500|4175753|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|4174500|4175753|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 362403..361150 <gbrowseImage>
name=AC_000091:361150..362403
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|360150|363403|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|361150|362403|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 1381939..1380686 <gbrowseImage>
name=NC_010473:1380686..1381939
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|1378180|1384445|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|1378180|1384445|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11257.R46a9adbe1491e&page=11257&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="P46a9adbeb30c8" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11257.P46a9adbeb30c8&page=11257&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Y46a9adbf0030f" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
''lacY(del)'' (Keio:JW0334)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]
|

|-
|
lacYD237N,G
|

|
D237N,G
|

|
Defect in melibiose transport
|

|

|
seeded from [http://www.uniprot.org/uniprot/P02920 UniProt:P02920]
|-
|
lacYK358T
|

|
K358T
|

|
Defect in melibiose transport
|

|

|
seeded from [http://www.uniprot.org/uniprot/P02920 UniProt:P02920]
|-
|
''lacY1''
|

|

|

|

|

|
[[cgscmutation:4495|CGSC:4495]]
|

|-
|
''lacY40''
|

|

|

|

|

|
[[cgscmutation:5870|CGSC:5870]]
|

|-
|
''lacY29''
|

|

|

|

|

|
[[cgscmutation:6818|CGSC:6818]]
|

|-
|
''lacY328''(Am)
|

|

|

|

|

|
[[cgscmutation:7291|CGSC:7291]]
|
amber (UAG) mutation
|-
|
''lacY96''
|

|

|

|

|

|
[[cgscmutation:7302|CGSC:7302]]
|

|-
|
''lacY0''(Am)
|

|

|

|

|

|
[[cgscmutation:12982|CGSC:12982]]
|
amber (UAG) mutation
|-
|
''lacY41''
|

|

|

|

|

|
[[cgscmutation:13218|CGSC:13218]]
|

|-
|
''lacY83''
|

|

|

|

|

|
[[cgscmutation:14688|CGSC:14688]]
|

|-
|
''MAD59-lacY''
|

|

|
Carbon Utilization
|
Unable to utiliza Malibose at 42C
|
PMID:330501
|
Experimental Strain: MAD59-lacY
|

|-
|
''MAD59-lacY''
|

|

|
Carbon Utilization
|
Unable to utilize lactose at 42C
|
PMID:330501
|
Experimental Strain: MAD59-lacY
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11257.Y46a9adbf0030f&page=11257&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Q4e04be37eefe2" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.11257.Q4e04be37eefe2&page=11257&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="W46a9adbf9e420" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW0334
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:gccTACTATTTAAAAAACACAAACTTTTGG

Primer 2:ccAGCGACTTCATTCACCTGACGACGCAGC
|-
|
[[:Category:Kohara_Phage:10A6|10A6]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=138 Genobase]
|
PMID:3038334
|-
|
[[proA:Gene|proA81::Tn10]]
|
Linked marker
|
CAG18447 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38993 CGSC7330]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/>
|-
|
[[lacI:Gene|lacI3042::Tn10]]
|
Linked marker
|
CAG18439 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39002 CGSC7334]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 84% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:lacI42::Tn10 nnnCAG18439 also carries lacZ118(0c) (CGSC).

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11257.W46a9adbf9e420&page=11257&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="C46a9adc034fb4" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[[EcoCyc]]
|
EcoCyc:EG10526
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG10526
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=949083 GeneID:949083]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120000519
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB0521
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0001181
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11257.C46a9adc034fb4&page=11257&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="N46a67aea926c3" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11257.N46a67aea926c3&page=11257&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:lac genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

entD:Gene

2013-07-08T19:52:22Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|entD}}{{Tab On|Gene|entD}}{{Tab|Gene Product(s)|entD}}{{Tab|Expression|entD}}{{Tab|Evolution|entD}}{{Tab|On One Page|entD}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="R46a9b3f94dcd3" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''entD''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Enterochelin
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK0575, b0583, JW5085''<ref name='LIB:Riley_2006'/>, JW5085''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11727.R46a9b3f94dcd3&page=11727&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="T46a9b3f9c5b1c" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
13.12 minutes 
|
MG1655: 609311..608682 <gbrowseImage>
name=NC_000913:608682..609311
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10262 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|607682|610311|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|608682|609311|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10262 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 592795..592166 <gbrowseImage>
name=NC_012967:592166..592795
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|592166|592795|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|592166|592795|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 511442..512071 <gbrowseImage>
name=NC_012759:511442..512071
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|511442|512071|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|511442|512071|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 609311..608682 <gbrowseImage>
name=AC_000091:608682..609311
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|607682|610311|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|608682|609311|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 548643..548014 <gbrowseImage>
name=NC_010473:548014..548643
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|546756|549901|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|546756|549901|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 661903..661274 <gbrowseImage>
name=NC_010473:661274..661903
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|660016|663161|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|660016|663161|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11727.T46a9b3f9c5b1c&page=11727&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="S46a9b3fa6dff8" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11727.S46a9b3fa6dff8&page=11727&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="B46a9b3faadd6e" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
''entD''-
|

|

|
Auxotrophies
|
Mutation prevents synthesis of enterochelin, Figure 3. Consequently rate of iron uptake is less than 10% of parent strain, Table 3.
|
PMID:4919746
|

|
Mutation was induced by MNNG treatment.
|-
|
entD-
|

|

|
Change in Protein Concentration
|
Mutation causes decreased levels of cytochrome b1 - Table 2.
|
PMID:4919746
|

|

|-
|
Allele
|
Nt Changes
|
AA Changes
|
Phenotype: Type
|
Phenotype: Decription
|
*PMID:12345

*PMID:5678

*PMID:89012

|
Availability
|
Comments
|-
|
Allele
|
Nt Changes
|
AA Changes
|
Phenotype: Type
|
Phenotype: Decription
|
*PMID:12345

*PMID:5678

*PMID:89012

|
Availability
|
Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11727.B46a9b3faadd6e&page=11727&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="P4e04ba64e890f" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.11727.P4e04ba64e890f&page=11727&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="I46a9b3fb562ee" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW5085
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCGTCGATATGAAAACTACGCA

Primer 2:CCATCGTGTTGGCACAGCGTTAT
|-
|
[[:Category:Kohara_Phage:21A9S|21A9S]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=163 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:2D12|2D12]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=164 Genobase]
|
PMID:3038334
|-
|
[[purK:Gene|purK79::Tn10]]
|
Linked marker
|
CAG12171 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39380 CGSC7342]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 6% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:purE79::Tn10
|-
|
[[dsbG:Gene|dsbG601::Tn10]]
|
Linked marker
|
CAG12149 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39387 CGSC7346]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 36% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zbd-601::Tn10, zbe-601::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11727.I46a9b3fb562ee&page=11727&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="I46a9b3fbde8cb" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[[EcoCyc]]
|
EcoCyc:EG10262
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG10262
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=945194 GeneID:945194]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120000256
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB0258
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0002009
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11727.I46a9b3fbde8cb&page=11727&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="U46a6d1708d01a" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11727.U46a6d1708d01a&page=11727&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes not in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:ent genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

entD:Gene

2013-07-08T19:52:04Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|entD}}{{Tab On|Gene|entD}}{{Tab|Gene Product(s)|entD}}{{Tab|Expression|entD}}{{Tab|Evolution|entD}}{{Tab|On One Page|entD}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="R46a9b3f94dcd3" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''entD''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Enterochelin
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK0575, b0583, JW5085''<ref name='LIB:Riley_2006'/>, JW5085''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11727.R46a9b3f94dcd3&page=11727&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="T46a9b3f9c5b1c" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
13.12 minutes 
|
MG1655: 609311..608682 <gbrowseImage>
name=NC_000913:608682..609311
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10262 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|607682|610311|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|608682|609311|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10262 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 592795..592166 <gbrowseImage>
name=NC_012967:592166..592795
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|592166|592795|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|592166|592795|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 511442..512071 <gbrowseImage>
name=NC_012759:511442..512071
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|511442|512071|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|511442|512071|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 609311..608682 <gbrowseImage>
name=AC_000091:608682..609311
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|607682|610311|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|608682|609311|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 548643..548014 <gbrowseImage>
name=NC_010473:548014..548643
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|546756|549901|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|546756|549901|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 661903..661274 <gbrowseImage>
name=NC_010473:661274..661903
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|660016|663161|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|660016|663161|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11727.T46a9b3f9c5b1c&page=11727&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="S46a9b3fa6dff8" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11727.S46a9b3fa6dff8&page=11727&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="B46a9b3faadd6e" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
''entD''-
|

|

|
Auxotrophies
|
Mutation prevents synthesis of enterochelin, Figure 3. Consequently rate of iron uptake is less than 10% of parent strain, Table 3.
|
PMID:4919746
|

|
Mutation was induced by MNNG treatment.
|-
|
entD-
|

|

|
Change in Protein Concentration
|
Mutation causes decreased levels of cytochrome b1 - Table 2.
|
PMID:4919746
|

|

|-
|
Allele
|
Nt Changes
|
AA Changes
|
Phenotype: Type
|
Phenotype: Decription
|
*PMID:12345

*PMID:5678

*PMID:89012

|
Availability
|
Comments
|-
|
Allele
|
Nt Changes
|
AA Changes
|
Phenotype: Type
|
Phenotype: Decription
|
*PMID:12345

*PMID:5678

*PMID:89012

|
Availability
|
Comments
|-
|

|

|

|

|

|

|

|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11727.B46a9b3faadd6e&page=11727&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="P4e04ba64e890f" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.11727.P4e04ba64e890f&page=11727&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="I46a9b3fb562ee" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW5085
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCGTCGATATGAAAACTACGCA

Primer 2:CCATCGTGTTGGCACAGCGTTAT
|-
|
[[:Category:Kohara_Phage:21A9S|21A9S]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=163 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:2D12|2D12]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=164 Genobase]
|
PMID:3038334
|-
|
[[purK:Gene|purK79::Tn10]]
|
Linked marker
|
CAG12171 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39380 CGSC7342]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 6% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:purE79::Tn10
|-
|
[[dsbG:Gene|dsbG601::Tn10]]
|
Linked marker
|
CAG12149 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39387 CGSC7346]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 36% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zbd-601::Tn10, zbe-601::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11727.I46a9b3fb562ee&page=11727&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="I46a9b3fbde8cb" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[[EcoCyc]]
|
EcoCyc:EG10262
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG10262
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=945194 GeneID:945194]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120000256
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB0258
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0002009
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11727.I46a9b3fbde8cb&page=11727&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="U46a6d1708d01a" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11727.U46a6d1708d01a&page=11727&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes not in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:ent genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

rpoB:Gene

2013-06-14T23:35:23Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|rpoB}}{{Tab On|Gene|rpoB}}{{Tab|Gene Product(s)|rpoB}}{{Tab|Expression|rpoB}}{{Tab|Evolution|rpoB}}{{Tab|On One Page|rpoB}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="T46aa0407c6e8a" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''rpoB''
|-
!align=left {{table_heading_style}} |Mnemonic
||
RNA polymerase
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK3978, b3987, JW3950, ftsR, groN, nitB, rif, ron, sdgB, stl, stv, tabD''<ref name='LIB:Riley_2006'/>, mbrD?, tabD, tabG''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.18531.T46aa0407c6e8a&page=18531&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="W46aa040856b71" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
90.08 minutes 
|
MG1655: 4179268..4183296 <gbrowseImage>
name=NC_000913:4179268..4183296
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10894 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|4178268|4184296|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|4179268|4183296|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10894 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 4160856..4164884 <gbrowseImage>
name=NC_012967:4160856..4164884
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|4160856|4164884|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|4160856|4164884|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 4068948..4072976 <gbrowseImage>
name=NC_012759:4068948..4072976
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|4068948|4072976|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|4068948|4072976|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3455436..3451408 <gbrowseImage>
name=AC_000091:3451408..3455436
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|3450408|3456436|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|3451408|3455436|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 4278964..4282992 <gbrowseImage>
name=NC_010473:4278964..4282992
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|4270908|4291048|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|4270908|4291048|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.18531.W46aa040856b71&page=18531&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="K46aa04091d308" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
4179268
|
Edman degradation
|
PMID:1095419 PMID:6266829 
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.18531.K46aa04091d308&page=18531&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="G46aa040968147" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
rpoBE813K
|

|
E813K
|

|
Disrupts the enzyme's active center
|

|

|
seeded from [http://www.uniprot.org/uniprot/P0A8V2 UniProt:P0A8V2]
|-
|
''rpoB352''
|

|

|

|

|

|
[[cgscmutation:5386|CGSC:5386]]
|

|-
|
''rpoB308''
|

|

|

|

|

|
[[cgscmutation:5088|CGSC:5088]]
|

|-
|
''rpoB70''
|

|

|

|

|

|
[[cgscmutation:5697|CGSC:5697]]
|

|-
|
''rpoB302''
|

|

|

|

|

|
[[cgscmutation:5724|CGSC:5724]]
|

|-
|
''rpoB301''
|

|

|

|

|

|
[[cgscmutation:5967|CGSC:5967]]
|

|-
|
''rpoB79''
|

|

|

|

|

|
[[cgscmutation:6644|CGSC:6644]]
|

|-
|
''rpoB180''
|

|

|

|

|

|
[[cgscmutation:6647|CGSC:6647]]
|

|-
|
''rpoB318''
|

|

|

|

|

|
[[cgscmutation:6800|CGSC:6800]]
|

|-
|
''rpoB316''
|

|

|

|

|

|
[[cgscmutation:7059|CGSC:7059]]
|

|-
|
''rpoB324''(rifR)
|

|

|

|
rifampicin resistant
|

|
[[cgscmutation:7075|CGSC:7075]]
|

|-
|
''rpoB331''(rifR)
|

|

|

|
rifampicin resistant
|

|
[[cgscmutation:8722|CGSC:8722]]
|

|-
|
''rpoB306''
|

|

|

|

|

|
[[cgscmutation:9150|CGSC:9150]]
|

|-
|
''rpoB2''(ts)
|

|

|

|
temperature sensitive
|
PMID:8113195
|
[[cgscmutation:9774|CGSC:9774]]
|

|-
|
''rpoB7''(ts, rifR)
|

|

|

|
"temperature-sensitive, rifampicin resistant"
|

|
[[cgscmutation:9775|CGSC:9775]]
|

|-
|
''rpoB3''(rifR)
|

|

|

|
rifampicin resistant
|

|
[[cgscmutation:10384|CGSC:10384]]
|

|-
|
''rpoB0''(rifR)
|

|

|

|
rifampicin resistant
|

|
[[cgscmutation:10521|CGSC:10521]]
|

|-
|
''rpoB342''
|

|

|

|

|

|
[[cgscmutation:10832|CGSC:10832]]
|

|-
|
''rpoB303''
|

|

|

|

|

|
[[cgscmutation:11987|CGSC:11987]]
|

|-
|
''rpoB23''(rifR)
|

|

|

|
rifampicin resistant
|

|
[[cgscmutation:14556|CGSC:14556]]
|

|-
|
''rpoB307''
|

|

|

|

|

|
[[cgscmutation:16669|CGSC:16669]]
|

|-
|
''rpoB317''
|

|

|

|

|

|
[[cgscmutation:17095|CGSC:17095]]
|

|-
|
''rpoB2066''
|

|

|

|

|
PMID:7009579
|
[[cgscmutation:67259|CGSC:67259]]
|

|-
|
''rpoB2069''
|

|

|

|

|
PMID:7009579
|
[[cgscmutation:67261|CGSC:67261]]
|

|-
|
''rpoB2067''
|

|

|

|

|
PMID:7009579
|
[[cgscmutation:67262|CGSC:67262]]
|

|-
|
''rpoB2068''
|

|

|

|

|
PMID:7009579
|
[[cgscmutation:67265|CGSC:67265]]
|

|-
|
''rpoB*35''
|

|

|
Sensitivity to
|
decreases sensitivity to bicyclomycin
|
PMID:21183718
|

|
fig. 2; the rpoB*35 allele is described in <ref name='PMID:xxxx'/>
|-
|
''rpoB361'' ''ridB1''
|

|

|
Dependence
|
Mutant is dependent on rifampicin. with the condition its grown below 42C in rich medium.
|
PMID:6757665
|
strain: PB61
|
table 3 and figure 1
|-
|
''stv-72''
|

|

|
Resistant to
|
Resistant to Streptovaricin
|
PMID:4387741
|
Strain: KY5102
|
Figure 1.

The paper also describes other alleles with the same phenotype.
|-
|
''mbrD7''
|

|

|
Resistant to
|
Resistance to camphor, other mutants with similar phenotypes are described.
|
PMID:2176633

PMID:1925019
|

|
Table 2 and Table 1
|-
|
''rpoB'' in strain K100R3
|

|

|
Resistant to
|
Rfampin resistance
|
PMID:4879326
|
Strain: K1100R3
|
Table 1
|-
|
''rpoB'' 3445
|

|
AA residue affected 507-687
|
Resistant to
|
Resistant to rifampicin
|
PMID:3050121
|
Several strain were described in table 7
|
Evidence in table 7
|-
|
''rpoB'' in strain KY1343
|

|

|
Resistant to
|
Resistance to Streptolydigin. in vivo.
|
PMID:4571524
|
Strains: KY1343, KY1345, KY1360, KY1361, KY1348
|
Table 2 shows resistance phenotype and other strains with similar mutations.
|-
|
''rpoB'' in strain PA6075
|

|

|
Resistant to
|
Resistant to Streptolydigin
|
PMID:4897821
|
Strain: PA6075
|
Figure 1
|-
|
''rpoB706'' ''dnaA1''
|

|

|
Growth Phenotype
|
''DnaA1'' Mutant is unable to grow at 42.5C, mutation in ''rpoB'' suppresses thermosensitivity allowing the strain to grow at 42.5C.
|
PMID:400782
|
Experimental Strain: EC8
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.18531.G46aa040968147&page=18531&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="C4e04c2f293bcc" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.18531.C4e04c2f293bcc&page=18531&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="W46aa040a2eb4e" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW3950
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:gccGTTTACTCCTATACCGAGAAAAAACGTATTCG

Primer 2:cctTCGTCTTCCAGTTCGATGTTGATACCC
|-
|
[[:Category:Kohara_Phage:7B7|7B7]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=533 Genobase]
|
PMID:3038334
|-
|
[[argE:Gene|argE86::Tn10]]
|
Linked marker
|
CAG12185 = [http://cgsc2.biology.yale.edu/Strain.php?ID=37153 CGSC7471]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 36% <ref name='LIB:Nichols_linked_Tn'/>
|-
|
[[thiC:Gene|thiC39::Tn10]]
|
Linked marker
|
CAG18500 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40361 CGSC7472]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 59% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:thi-39::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.18531.W46aa040a2eb4e&page=18531&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="X46aa040acfc20" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[[EcoCyc]]
|
EcoCyc:EG10894
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG10894
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=948488 GeneID:948488]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120000885
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB0887
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0013041
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.18531.X46aa040acfc20&page=18531&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="L46aa040ea10b7" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.18531.L46aa040ea10b7&page=18531&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes not in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:rpo genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

dnaA:Gene

2013-06-14T23:35:19Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|dnaA}}{{Tab On|Gene|dnaA}}{{Tab|Gene Product(s)|dnaA}}{{Tab|Expression|dnaA}}{{Tab|Evolution|dnaA}}{{Tab|On One Page|dnaA}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="M46a9fcb4e7751" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''dnaA''
|-
!align=left {{table_heading_style}} |Mnemonic
||
DNA
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK3694, b3702, JW3679''<ref name='LIB:Riley_2006'/>, JW3679''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17963.M46a9fcb4e7751&page=17963&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="C46a9fcb575c9c" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
83.63 minutes 
|
MG1655: 3881752..3880349 <gbrowseImage>
name=NC_000913:3880349..3881752
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10235 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|3879349|3882752|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|3880349|3881752|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10235 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 3844090..3842687 <gbrowseImage>
name=NC_012967:3842687..3844090
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|3842687|3844090|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|3842687|3844090|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 3768682..3770085 <gbrowseImage>
name=NC_012759:3768682..3770085
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|3768682|3770085|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|3768682|3770085|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3756686..3758089 <gbrowseImage>
name=AC_000091:3756686..3758089
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|3755686|3759089|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|3756686|3758089|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17963.C46a9fcb575c9c&page=17963&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Q46a9fcb639692" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17963.Q46a9fcb639692&page=17963&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="W46a9fcb6837b5" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
Strain DH10B
|

|
P18S
|

|
Nonsynonomous mutation
|
PMID:18245285
|
[https://asap.ahabs.wisc.edu/asap/home.php ASAP]
|
This is a SNP in E. coli K-12 Strain [[DH10B]]
|-
|
''dnaA177''(ts)
|

|

|

|
temperature sensitive
|

|
[[cgscmutation:5231|CGSC:5231]]
|

|-
|
''dnaA46''
|

|
A184V and H252Y
|
Growth Phenotype
|
Temperature-sensitive for initiation of DNA replication.
|
PMID:1495477
|

|

|-
|
''dnaA508''(ts)
|

|

|

|
temperature sensitive
|
PMID:6094968
|
[[cgscmutation:5272|CGSC:5272]]
|

|-
|
''dnaA5''(ts)
|

|

|

|
temperature sensitive
|
PMID:321430
PMID:6094968
|
[[cgscmutation:7325|CGSC:7325]]
|

|-
|
''dnaA46''(ts)
|
783 C->T
(where +1 is the txn'l start site)
|
Ala->Val
|
Growth Phenotype
|
temperature sensitive
|
PMID:6094968
|
[[cgscmutation:73497|CGSC:73497]]
|
Sequence of the mutant allele is from Ohmori et al.<ref name='PMID:6234204'/>
|-
|
''dnaAcos''
|
''dnaA1''(Cs) 699 A->T
''dnaA46''(Ts) 783 C->T
''dnaA2''(Cs) 986 C->T
''dnaA3''(Cs) 1043 T->C
(Where +1 is the txn'l start site)
|
Gln->Leu
Ala->Val
His->Tyr
Tyr->His

|
Growth Phenotype
|
over initiation of DNA replication at 30°C
|
PMID:9379896
|

|
''dnaAcos'' was isolated as a temperature-resistant revertant of ''dnaA46''(Ts). <ref name='PMID:353526'/>
|-
|
''dnaA'' W6A
|

|
W6A
|

|

|
PMID:15878847
|

|
W6 is needed for oligomerization
|-
|
''dnaA311''(Am)
|

|

|
Growth Phenotype
|
inhibition of initiation of DNA replication
|
PMID:7007354
|

|
suppressed in ''supF, supE, supD'', and ''supP'' strains
|-
|
''dnaA366''(Am)
|

|

|
Growth Phenotype
|
inhibition of initiation of DNA replication
|
PMID:7007354
|

|
*ts in ''supF''
*suppressed in ''supE and supD'' strains
|-
|
''dnaA91''(Am)
|

|

|
Growth Phenotype
|
inhibition of initiation of DNA replication
|
PMID:7007354
|

|
suppressed in ''supF, supD'', and ''supP'' strains
|-
|
dnaA204(Ts)
|

|

|
Resistant to
|
blocks resistance to camphor in all mbr mutants
|
PMID:2176633
PMID:6094968
|

|

|-
|
dnaA167
|

|

|
Growth Phenotype
|
temperature sensitive
|
PMID:6094968
|

|

|-
|
dnaA211
|

|

|
Growth Phenotype
|
temperature sensitive
|
PMID:6094968
|

|

|-
|
dnaA606
|

|

|
Growth Phenotype
|
temperature sensitive
|
PMID:6094968
|

|

|-
|
dnaA601
|

|

|
Growth Phenotype
|
temperature sensitive
|
PMID:6094968
|

|

|-
|
dnaA604
|

|

|
Growth Phenotype
|
temperature sensitive
|
PMID:6094968
|

|

|-
|
dnaA603
|

|

|
Growth Phenotype
|
temperature sensitive
|
PMID:6094968
|

|

|-
|
dnaA205
|

|

|
Growth Phenotype
|
temperature sensitive
|
PMID:6094968
|

|

|-
|
dnaA602
|

|

|
Growth Phenotype
|
temperature sensitive
|
PMID:6094968
|

|

|-
|
dnaA203
|

|

|
Growth Phenotype
|
temperature sensitive
|
PMID:6094968
|

|

|-
|
''dnaA46''
|

|

|
Resistant to
|
Increased resistance to rifampin.
|
PMID:400782
|
Parent Strain: EC3 X EC6

Experimental Strain: EC8
|
Mutant phenotype found at Table 2.
|-
|
''rpoB706'' ''dnaA1''
|

|

|
Growth Phenotype
|
''DnaA1'' Mutant is unable to grow at 42.5C, mutation in ''rpoB'' suppresses thermosensitivity allowing the strain to grow at 42.5C.
|
PMID:400782
|
Experimental Strain: EC8
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17963.W46a9fcb6837b5&page=17963&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="X4e04b9f59b87c" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.17963.X4e04b9f59b87c&page=17963&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="T46a9fcb747f02" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW3679
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCTCACTTTCGCTTTGGCAGCA

Primer 2:CCaGATGACAATGTTCTGATTAA
|-
|
[[:Category:Kohara_Phage:3F11|3F11]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=564 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:3C10|3C10]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=565 Genobase]
|
PMID:3038334
|-
|
zid-501::Tn10
|
Linked marker
|
CAG18499 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38945 CGSC7458]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 81% <ref name='LIB:Nichols_linked_Tn'/>
|-
|
[[rbsA:Gene|rbsD296::Tn10]]
|
Linked marker
|
CAG18501 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40333 CGSC7460]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 10% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zie-296::Tn10
|-
|
tna::Tn10
|
Linked marker
|
WP72<ref name='PMID:7007354'/>
|
*tryptophanase minus
*tetracycline resistant
*est. P1 cotransduction: 85%

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17963.T46a9fcb747f02&page=17963&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="K46a9fcb7e76e2" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[[EcoCyc]]
|
EcoCyc:EG10235
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG10235
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=948217 GeneID:948217]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120000229
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB0231
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0012103
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17963.K46a9fcb7e76e2&page=17963&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="O46a716ef3741a" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17963.O46a716ef3741a&page=17963&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes not in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:dna genes]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

dnaA:Gene

2013-06-07T23:03:30Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|dnaA}}{{Tab On|Gene|dnaA}}{{Tab|Gene Product(s)|dnaA}}{{Tab|Expression|dnaA}}{{Tab|Evolution|dnaA}}{{Tab|On One Page|dnaA}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="M46a9fcb4e7751" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''dnaA''
|-
!align=left {{table_heading_style}} |Mnemonic
||
DNA
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK3694, b3702, JW3679''<ref name='LIB:Riley_2006'/>, JW3679''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17963.M46a9fcb4e7751&page=17963&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="C46a9fcb575c9c" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
83.63 minutes 
|
MG1655: 3881752..3880349 <gbrowseImage>
name=NC_000913:3880349..3881752
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10235 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|3879349|3882752|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|3880349|3881752|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10235 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 3844090..3842687 <gbrowseImage>
name=NC_012967:3842687..3844090
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|3842687|3844090|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|3842687|3844090|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 3768682..3770085 <gbrowseImage>
name=NC_012759:3768682..3770085
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|3768682|3770085|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|3768682|3770085|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3756686..3758089 <gbrowseImage>
name=AC_000091:3756686..3758089
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|3755686|3759089|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|3756686|3758089|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17963.C46a9fcb575c9c&page=17963&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Q46a9fcb639692" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17963.Q46a9fcb639692&page=17963&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="W46a9fcb6837b5" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
Strain DH10B
|

|
P18S
|

|
Nonsynonomous mutation
|
PMID:18245285
|
[https://asap.ahabs.wisc.edu/asap/home.php ASAP]
|
This is a SNP in E. coli K-12 Strain [[DH10B]]
|-
|
''dnaA177''(ts)
|

|

|

|
temperature sensitive
|

|
[[cgscmutation:5231|CGSC:5231]]
|

|-
|
''dnaA46''
|

|
A184V and H252Y
|
Growth Phenotype
|
Temperature-sensitive for initiation of DNA replication.
|
PMID:1495477
|

|

|-
|
''dnaA508''(ts)
|

|

|

|
temperature sensitive
|
PMID:6094968
|
[[cgscmutation:5272|CGSC:5272]]
|

|-
|
''dnaA5''(ts)
|

|

|

|
temperature sensitive
|
PMID:321430
PMID:6094968
|
[[cgscmutation:7325|CGSC:7325]]
|

|-
|
''dnaA46''(ts)
|
783 C->T
(where +1 is the txn'l start site)
|
Ala->Val
|
Growth Phenotype
|
temperature sensitive
|
PMID:6094968
|
[[cgscmutation:73497|CGSC:73497]]
|
Sequence of the mutant allele is from Ohmori et al.<ref name='PMID:6234204'/>
|-
|
''dnaAcos''
|
''dnaA1''(Cs) 699 A->T
''dnaA46''(Ts) 783 C->T
''dnaA2''(Cs) 986 C->T
''dnaA3''(Cs) 1043 T->C
(Where +1 is the txn'l start site)
|
Gln->Leu
Ala->Val
His->Tyr
Tyr->His

|
Growth Phenotype
|
over initiation of DNA replication at 30°C
|
PMID:9379896
|

|
''dnaAcos'' was isolated as a temperature-resistant revertant of ''dnaA46''(Ts). <ref name='PMID:353526'/>
|-
|
''dnaA'' W6A
|

|
W6A
|

|

|
PMID:15878847
|

|
W6 is needed for oligomerization
|-
|
''dnaA311''(Am)
|

|

|
Growth Phenotype
|
inhibition of initiation of DNA replication
|
PMID:7007354
|

|
suppressed in ''supF, supE, supD'', and ''supP'' strains
|-
|
''dnaA366''(Am)
|

|

|
Growth Phenotype
|
inhibition of initiation of DNA replication
|
PMID:7007354
|

|
*ts in ''supF''
*suppressed in ''supE and supD'' strains
|-
|
''dnaA91''(Am)
|

|

|
Growth Phenotype
|
inhibition of initiation of DNA replication
|
PMID:7007354
|

|
suppressed in ''supF, supD'', and ''supP'' strains
|-
|
dnaA204(Ts)
|

|

|
Resistant to
|
blocks resistance to camphor in all mbr mutants
|
PMID:2176633
PMID:6094968
|

|

|-
|
dnaA167
|

|

|
Growth Phenotype
|
temperature sensitive
|
PMID:6094968
|

|

|-
|
dnaA211
|

|

|
Growth Phenotype
|
temperature sensitive
|
PMID:6094968
|

|

|-
|
dnaA606
|

|

|
Growth Phenotype
|
temperature sensitive
|
PMID:6094968
|

|

|-
|
dnaA601
|

|

|
Growth Phenotype
|
temperature sensitive
|
PMID:6094968
|

|

|-
|
dnaA604
|

|

|
Growth Phenotype
|
temperature sensitive
|
PMID:6094968
|

|

|-
|
dnaA603
|

|

|
Growth Phenotype
|
temperature sensitive
|
PMID:6094968
|

|

|-
|
dnaA205
|

|

|
Growth Phenotype
|
temperature sensitive
|
PMID:6094968
|

|

|-
|
dnaA602
|

|

|
Growth Phenotype
|
temperature sensitive
|
PMID:6094968
|

|

|-
|
dnaA203
|

|

|
Growth Phenotype
|
temperature sensitive
|
PMID:6094968
|

|

|-
|
''dnaA46''
|

|

|
Resistant to
|
Increased resistance to rifampin.
|
PMID:400782
|
Parent Strain: EC3 X EC6

Experimental Strain: EC8
|
Mutant phenotype found at Table 2.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17963.W46a9fcb6837b5&page=17963&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="X4e04b9f59b87c" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.17963.X4e04b9f59b87c&page=17963&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="T46a9fcb747f02" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW3679
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCTCACTTTCGCTTTGGCAGCA

Primer 2:CCaGATGACAATGTTCTGATTAA
|-
|
[[:Category:Kohara_Phage:3F11|3F11]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=564 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:3C10|3C10]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=565 Genobase]
|
PMID:3038334
|-
|
zid-501::Tn10
|
Linked marker
|
CAG18499 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38945 CGSC7458]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 81% <ref name='LIB:Nichols_linked_Tn'/>
|-
|
[[rbsA:Gene|rbsD296::Tn10]]
|
Linked marker
|
CAG18501 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40333 CGSC7460]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 10% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zie-296::Tn10
|-
|
tna::Tn10
|
Linked marker
|
WP72<ref name='PMID:7007354'/>
|
*tryptophanase minus
*tetracycline resistant
*est. P1 cotransduction: 85%

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17963.T46a9fcb747f02&page=17963&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="K46a9fcb7e76e2" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[[EcoCyc]]
|
EcoCyc:EG10235
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG10235
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=948217 GeneID:948217]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120000229
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB0231
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0012103
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17963.K46a9fcb7e76e2&page=17963&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="O46a716ef3741a" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17963.O46a716ef3741a&page=17963&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes not in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:dna genes]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

mlaA:Gene

2013-05-13T19:18:20Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|mlaA}}{{Tab On|Gene|mlaA}}{{Tab|Gene Product(s)|mlaA}}{{Tab|Expression|mlaA}}{{Tab|Evolution|mlaA}}{{Tab|On One Page|mlaA}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="D46a9dbe6bfcfe" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''mlaA''
|-
!align=left {{table_heading_style}} |Mnemonic
||

|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK2340, b2346, JW2343'', vacJ<ref name='LIB:Riley_2006'/>, JW2343, vacJ''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15255.D46a9dbe6bfcfe&page=15255&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="I46a9dbe7495e4" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
53.07 minutes, 53.07 minutes 
|
MG1655: 2463029..2462274 <gbrowseImage>
name=NC_000913:2462274..2463029
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G7216 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|2461274|2464029|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|ecoli|NC_000913|2462274|2463029|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=G7216 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 2409449..2408694 <gbrowseImage>
name=NC_012967:2408694..2409449
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|2408694|2409449|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|2408694|2409449|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 2348079..2348834 <gbrowseImage>
name=NC_012759:2348079..2348834
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|012759|2348079|NC_2348834|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|012759|2348079|NC_2348834|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 2470453..2469698 <gbrowseImage>
name=AC_000091:2469698..2470453
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|ecoli_W3110|AC_000091|2468698|2471453|GBrowse(W3110)}}
|
{{GBrowseFastaLink|ecoli_W3110|AC_000091|2469698|2470453|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 2554794..2554039 <gbrowseImage>
name=NC_010473:2554039..2554794
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|ecoli_DH10B|NC_010473|2552529|2556304|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|ecoli_DH10B|NC_010473|2552529|2556304|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15255.I46a9dbe7495e4&page=15255&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="G46a9dbe800bed" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15255.G46a9dbe800bed&page=15255&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="B46a9dbe846513" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
ΔvacJ (Keio:JW2343)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]
|

|-
|
''mlaA(del)''
|

|

|
Growth Phenotype
|
Increase outer membrane permeability.
|
PMID:19383799
|
Parental Strain: JCM158, a deriv from the Keo Collection

Experimental Strains: JCM718 & JCM745
|
Figure 1 and 3.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15255.B46a9dbe846513&page=15255&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="F4e04bf51303ec" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.15255.F4e04bf51303ec&page=15255&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="J46a9dbe8f1d12" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW2343
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCAAGCTTCGCCTGTCGGCGCT

Primer 2:CCTTCAGAATCAATATCTTTTAA
|-
|
[[:Category:Kohara_Phage:6F7|6F7]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=410 Genobase]
|
PMID:3038334
|-
|
[[yfbO:Gene|zfb-223::Tn10]]
|
Linked marker
|
CAG18484 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40073 CGSC7406]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 1% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zej-223::Tn10
|-
|
zfd-1::Tn10
|
Linked marker
|
CAG18467 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40075 CGSC7408]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 32% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zfb-1::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15255.J46a9dbe8f1d12&page=15255&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="L46a9dbe99261b" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7216 EcoCyc:G7216]
|

|-
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB4024 EchoBASE:EB4024]
|

|-
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b2346 EcoliGenExpDB:b2346]
|

|-
|
[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOL199310/new-image?object=C2890 ECOL199310CYC:C2890]
|

|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG14276 EcoGene:EG14276]
|

|-
|
[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOO157/new-image?object=VACJ ECOO157CYC:VACJ]
|

|-
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0007745&formSubmitReturn=1 ASAP:ABE-0007745]
|

|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7216 ECOCYC:G7216]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=945582 GeneID:945582]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15255.L46a9dbe99261b&page=15255&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="D46a6f8ffb022b" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15255.D46a6f8ffb022b&page=15255&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:vac genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

mlaC:Gene

2013-05-13T19:16:56Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|mlaC}}{{Tab On|Gene|mlaC}}{{Tab|Gene Product(s)|mlaC}}{{Tab|Expression|mlaC}}{{Tab|Evolution|mlaC}}{{Tab|On One Page|mlaC}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="Q46a9efd9ad263" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''mlaC''
|-
!align=left {{table_heading_style}} |Mnemonic
||

|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK3181, b3192, JW3159'', yrbC<ref name='LIB:Riley_2006'/>, JW3159, yrbC''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16937.Q46a9efd9ad263&page=16937&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="O46a9efda39700" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
71.89 minutes 
|
MG1655: 3335913..3335278 <gbrowseImage>
name=NC_000913:3335278..3335913
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G7659 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|3334278|3336913|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|ecoli|NC_000913|3335278|3335913|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=G7659 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 3273126..3272491 <gbrowseImage>
name=NC_012967:3272491..3273126
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|3272491|3273126|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|3272491|3273126|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 3222426..3223061 <gbrowseImage>
name=NC_012759:3222426..3223061
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|012759|3222426|NC_3223061|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|012759|3222426|NC_3223061|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3337746..3337111 <gbrowseImage>
name=AC_000091:3337111..3337746
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|ecoli_W3110|AC_000091|3336111|3338746|GBrowse(W3110)}}
|
{{GBrowseFastaLink|ecoli_W3110|AC_000091|3337111|3337746|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 3433658..3433023 <gbrowseImage>
name=NC_010473:3433023..3433658
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|ecoli_DH10B|NC_010473|3431753|3434928|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|ecoli_DH10B|NC_010473|3431753|3434928|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16937.O46a9efda39700&page=16937&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="L46a9efdaed168" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16937.L46a9efdaed168&page=16937&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="U46a9efdb4159c" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
''ΔyrbC722::kan''
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:106044|CGSC:106044]]
|

|-
|
''mlaC(del)''
|

|

|
Growth Phenotype
|
Increase outer membrane permeability.
|
PMID:19383799
|
Parental Strain: JCM158, a Derivative from the Keo Collection.

Experimental Strain: JCM528
|
Figure 1 and 3.
|-
|
ΔyrbC (Keio:JW3159)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=108678 CGSC10397]<ref name='LIB:cgsc'/>
|

|-
|
''mlaC(del)'' ''pldA''
|

|

|
Growth Phenotype
|
Increase outer membrane permeability. Increase was more than single gene mutations.
|
PMID:19383799
|
Parental Strain: JCM158, a deriv in the Keo collection.

Experimental Strain: JCM736
|
Figure 1 and 3.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16937.U46a9efdb4159c&page=16937&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="Y4e04bf53524a0" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.16937.Y4e04bf53524a0&page=16937&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="L46a9efdc00242" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW3159
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCTTTAAACGTTTAATGATGGT

Primer 2:CCTTTTTTCTCTTCCAGAGTGAT
|-
|
[[:Category:Kohara_Phage:14F11|14F11]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=521 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:7E3|7E3]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=522 Genobase]
|
PMID:3038334
|-
|
[[sfsB:Gene|sfsB203::Tn10]]
|
Linked marker
|
CAG12072 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38770 CGSC7440]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 88% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zgj-203::Tn10, zha-203::Tn10
|-
|
[[yhcF:Gene|zhc-6::Tn10]]
|
Linked marker
|
CAG12153 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38765 CGSC7442]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 33% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zha-6::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16937.L46a9efdc00242&page=16937&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="J46a9efdc9b36e" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7659 EcoCyc:G7659]
|

|-
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB2650 EchoBASE:EB2650]
|

|-
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b3192 EcoliGenExpDB:b3192]
|

|-
|
[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOL199310/new-image?object=C3952 ECOL199310CYC:C3952]
|

|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG12798 EcoGene:EG12798]
|

|-
|
[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOO157/new-image?object=YRBC ECOO157CYC:YRBC]
|

|-
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0010489&formSubmitReturn=1 ASAP:ABE-0010489]
|

|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7659 ECOCYC:G7659]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=947710 GeneID:947710]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16937.J46a9efdc9b36e&page=16937&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="V46a70b5791978" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16937.V46a70b5791978&page=16937&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:yrb genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:y genes]]
[[Category:y genes]]
[[Category:Gene_List:BW2952]]

mlaC:Gene

2013-05-13T19:15:26Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|mlaC}}{{Tab On|Gene|mlaC}}{{Tab|Gene Product(s)|mlaC}}{{Tab|Expression|mlaC}}{{Tab|Evolution|mlaC}}{{Tab|On One Page|mlaC}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="Q46a9efd9ad263" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''mlaC''
|-
!align=left {{table_heading_style}} |Mnemonic
||

|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK3181, b3192, JW3159'', yrbC<ref name='LIB:Riley_2006'/>, JW3159, yrbC''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16937.Q46a9efd9ad263&page=16937&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="O46a9efda39700" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
71.89 minutes 
|
MG1655: 3335913..3335278 <gbrowseImage>
name=NC_000913:3335278..3335913
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G7659 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|3334278|3336913|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|ecoli|NC_000913|3335278|3335913|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=G7659 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 3273126..3272491 <gbrowseImage>
name=NC_012967:3272491..3273126
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|3272491|3273126|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|3272491|3273126|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 3222426..3223061 <gbrowseImage>
name=NC_012759:3222426..3223061
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|012759|3222426|NC_3223061|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|012759|3222426|NC_3223061|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3337746..3337111 <gbrowseImage>
name=AC_000091:3337111..3337746
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|ecoli_W3110|AC_000091|3336111|3338746|GBrowse(W3110)}}
|
{{GBrowseFastaLink|ecoli_W3110|AC_000091|3337111|3337746|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 3433658..3433023 <gbrowseImage>
name=NC_010473:3433023..3433658
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|ecoli_DH10B|NC_010473|3431753|3434928|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|ecoli_DH10B|NC_010473|3431753|3434928|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16937.O46a9efda39700&page=16937&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="L46a9efdaed168" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16937.L46a9efdaed168&page=16937&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="U46a9efdb4159c" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
''ΔyrbC722::kan''
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:106044|CGSC:106044]]
|

|-
|
''mlaC(del)''
|

|

|
Growth Phenotype
|
Increase outer membrane permeability.
|
PMID:19383799
|
Parental Strain: JCM158, a Derivative from the Keo Collection.

Experimental Strain: JCM528
|
Figure 1 and 3.
|-
|
ΔyrbC (Keio:JW3159)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=108678 CGSC10397]<ref name='LIB:cgsc'/>
|

|-
|
''mlaC(del)'' ''pldA''
|

|

|
Growth Phenotype
|
Increase outer membrane permeability. Increase was more than single gene mutations.
|
PMID:19383799
|

|
Figure 1 and 3.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16937.U46a9efdb4159c&page=16937&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="Y4e04bf53524a0" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.16937.Y4e04bf53524a0&page=16937&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="L46a9efdc00242" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW3159
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCTTTAAACGTTTAATGATGGT

Primer 2:CCTTTTTTCTCTTCCAGAGTGAT
|-
|
[[:Category:Kohara_Phage:14F11|14F11]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=521 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:7E3|7E3]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=522 Genobase]
|
PMID:3038334
|-
|
[[sfsB:Gene|sfsB203::Tn10]]
|
Linked marker
|
CAG12072 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38770 CGSC7440]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 88% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zgj-203::Tn10, zha-203::Tn10
|-
|
[[yhcF:Gene|zhc-6::Tn10]]
|
Linked marker
|
CAG12153 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38765 CGSC7442]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 33% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zha-6::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16937.L46a9efdc00242&page=16937&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="J46a9efdc9b36e" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7659 EcoCyc:G7659]
|

|-
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB2650 EchoBASE:EB2650]
|

|-
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b3192 EcoliGenExpDB:b3192]
|

|-
|
[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOL199310/new-image?object=C3952 ECOL199310CYC:C3952]
|

|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG12798 EcoGene:EG12798]
|

|-
|
[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOO157/new-image?object=YRBC ECOO157CYC:YRBC]
|

|-
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0010489&formSubmitReturn=1 ASAP:ABE-0010489]
|

|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7659 ECOCYC:G7659]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=947710 GeneID:947710]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16937.J46a9efdc9b36e&page=16937&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="V46a70b5791978" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16937.V46a70b5791978&page=16937&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:yrb genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:y genes]]
[[Category:y genes]]
[[Category:Gene_List:BW2952]]

mlaD:Gene

2013-05-13T19:10:29Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|mlaD}}{{Tab On|Gene|mlaD}}{{Tab|Gene Product(s)|mlaD}}{{Tab|Expression|mlaD}}{{Tab|Evolution|mlaD}}{{Tab|On One Page|mlaD}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="J46a9efdfe38b3" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''mlaD''
|-
!align=left {{table_heading_style}} |Mnemonic
||

|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK3182, b3193, JW3160, vpsC(S.f.)'', yrbD<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, vpsC, yrbD''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16939.J46a9efdfe38b3&page=16939&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="V46a9efe06f932" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
71.9 minutes 
|
MG1655: 3336483..3335932 <gbrowseImage>
name=NC_000913:3335932..3336483
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG12799 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|3334932|3337483|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|ecoli|NC_000913|3335932|3336483|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG12799 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 3273696..3273145 <gbrowseImage>
name=NC_012967:3273145..3273696
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|3273145|3273696|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|3273145|3273696|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 3223080..3223631 <gbrowseImage>
name=NC_012759:3223080..3223631
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|012759|3223080|NC_3223631|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|012759|3223080|NC_3223631|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3338316..3337765 <gbrowseImage>
name=AC_000091:3337765..3338316
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|ecoli_W3110|AC_000091|3336765|3339316|GBrowse(W3110)}}
|
{{GBrowseFastaLink|ecoli_W3110|AC_000091|3337765|3338316|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 3434228..3433677 <gbrowseImage>
name=NC_010473:3433677..3434228
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|ecoli_DH10B|NC_010473|3432575|3435330|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|ecoli_DH10B|NC_010473|3432575|3435330|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16939.V46a9efe06f932&page=16939&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="R46a9efe12eab4" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16939.R46a9efe12eab4&page=16939&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="K46a9efe176ccd" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
ΔyrbD (Keio:JW3160)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=108679 CGSC10398]<ref name='LIB:cgsc'/>
|

|-
|
''ΔyrbD723::kan''
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:106046|CGSC:106046]]
|

|-
|
''mlaE(del)''
|

|

|
Growth Phenotype
|
Increase outer membrane permeability.
|
PMID:19383799
|
Parental Strain: JCM158, A derivative of the Keo Collection.

Experimental Strain: JCM529
|
Figure 1 and 3.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16939.K46a9efe176ccd&page=16939&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="K4e04bf5460c1e" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.16939.K4e04bf5460c1e&page=16939&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="J46a9efe235a23" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW3160
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCCAAACGAAAAAAAATGAAAT

Primer 2:CCTTTCGTTGTACCCACAGGTTC
|-
|
[[:Category:Kohara_Phage:14F11|14F11]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=521 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:7E3|7E3]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=522 Genobase]
|
PMID:3038334
|-
|
[[sfsB:Gene|sfsB203::Tn10]]
|
Linked marker
|
CAG12072 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38770 CGSC7440]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 86% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zgj-203::Tn10, zha-203::Tn10
|-
|
[[yhcF:Gene|zhc-6::Tn10]]
|
Linked marker
|
CAG12153 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38765 CGSC7442]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 34% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zha-6::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16939.J46a9efe235a23&page=16939&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="E46a9efe2d0f40" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12799 EcoCyc:EG12799]
|

|-
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB2651 EchoBASE:EB2651]
|

|-
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b3193 EcoliGenExpDB:b3193]
|

|-
|
[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOL199310/new-image?object=C3953 ECOL199310CYC:C3953]
|

|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG12799 EcoGene:EG12799]
|

|-
|
[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOO157/new-image?object=YRBD ECOO157CYC:YRBD]
|

|-
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0010493&formSubmitReturn=1 ASAP:ABE-0010493]
|

|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12799 ECOCYC:EG12799]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=947712 GeneID:947712]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16939.E46a9efe2d0f40&page=16939&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="J46a70b5d3b93d" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16939.J46a70b5d3b93d&page=16939&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:yrb genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:y genes]]
[[Category:y genes]]
[[Category:Gene_List:BW2952]]

mlaE:Gene

2013-05-13T19:09:07Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|mlaE}}{{Tab On|Gene|mlaE}}{{Tab|Gene Product(s)|mlaE}}{{Tab|Expression|mlaE}}{{Tab|Evolution|mlaE}}{{Tab|On One Page|mlaE}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="D46a9efe625497" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''mlaE''
|-
!align=left {{table_heading_style}} |Mnemonic
||

|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK3183, b3194, JW3161, vpsB(S.f.)'', yrbE<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, vpsB, yrbE''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16941.D46a9efe625497&page=16941&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="E46a9efe6a57d1" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
71.91 minutes 
|
MG1655: 3337270..3336488 <gbrowseImage>
name=NC_000913:3336488..3337270
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG12800 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|3335488|3338270|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|ecoli|NC_000913|3336488|3337270|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG12800 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 3274483..3273701 <gbrowseImage>
name=NC_012967:3273701..3274483
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|3273701|3274483|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|3273701|3274483|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 3223636..3224418 <gbrowseImage>
name=NC_012759:3223636..3224418
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|012759|3223636|NC_3224418|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|012759|3223636|NC_3224418|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3339103..3338321 <gbrowseImage>
name=AC_000091:3338321..3339103
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|ecoli_W3110|AC_000091|3337321|3340103|GBrowse(W3110)}}
|
{{GBrowseFastaLink|ecoli_W3110|AC_000091|3338321|3339103|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 3435015..3434233 <gbrowseImage>
name=NC_010473:3434233..3435015
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|ecoli_DH10B|NC_010473|3432669|3436579|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|ecoli_DH10B|NC_010473|3432669|3436579|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16941.E46a9efe6a57d1&page=16941&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="D46a9efe764834" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16941.D46a9efe764834&page=16941&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Z46a9efe7ac8cf" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
ΔyrbE (Keio:JW3161)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=108680 CGSC10399]<ref name='LIB:cgsc'/>
|

|-
|
''ΔyrbE724::kan''
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:106048|CGSC:106048]]
|

|-
|
''mlaE(del)''
|

|

|
Growth Phenotype
|
Increase outer membrane permeability.
|
PMID:19383799
|
Parental Strain: JCM158, A deriv from the Keo Collection.

Experimental Strain: JCM530
|
Figure 1 and 3.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16941.Z46a9efe7ac8cf&page=16941&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="O4e04bf5578e9d" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.16941.O4e04bf5578e9d&page=16941&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="I46a9efe884a0c" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW3161
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCCTGTTAAATGCGCTGGCGTC

Primer 2:CCATTCCCAAACATCAATGCGGT
|-
|
[[:Category:Kohara_Phage:14F11|14F11]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=521 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:7E3|7E3]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=522 Genobase]
|
PMID:3038334
|-
|
[[sfsB:Gene|sfsB203::Tn10]]
|
Linked marker
|
CAG12072 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38770 CGSC7440]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 84% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zgj-203::Tn10, zha-203::Tn10
|-
|
[[yhcF:Gene|zhc-6::Tn10]]
|
Linked marker
|
CAG12153 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38765 CGSC7442]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 35% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zha-6::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16941.I46a9efe884a0c&page=16941&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="P46a9efe92b76f" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12800 EcoCyc:EG12800]
|

|-
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB2652 EchoBASE:EB2652]
|

|-
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b3194 EcoliGenExpDB:b3194]
|

|-
|
[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOL199310/new-image?object=C3954 ECOL199310CYC:C3954]
|

|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG12800 EcoGene:EG12800]
|

|-
|
[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOO157/new-image?object=YRBE ECOO157CYC:YRBE]
|

|-
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0010495&formSubmitReturn=1 ASAP:ABE-0010495]
|

|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12800 ECOCYC:EG12800]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=947732 GeneID:947732]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16941.P46a9efe92b76f&page=16941&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="T46a70b62dbc30" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16941.T46a70b62dbc30&page=16941&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:yrb genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:y genes]]
[[Category:y genes]]
[[Category:Gene_List:BW2952]]

mlaF:Gene

2013-05-13T19:07:15Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|mlaF}}{{Tab On|Gene|mlaF}}{{Tab|Gene Product(s)|mlaF}}{{Tab|Expression|mlaF}}{{Tab|Evolution|mlaF}}{{Tab|On One Page|mlaF}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="Z46a9efec74c5c" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''mlaF''
|-
!align=left {{table_heading_style}} |Mnemonic
||

|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK3184, b3195, JW3162, vpsA(S.f.)'', yrbF<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, vpsA, yrbF''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16943.Z46a9efec74c5c&page=16943&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="G46a9efed00c75" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
71.93 minutes 
|
MG1655: 3338087..3337278 <gbrowseImage>
name=NC_000913:3337278..3338087
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG12801 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|3336278|3339087|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|ecoli|NC_000913|3337278|3338087|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG12801 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 3275300..3274491 <gbrowseImage>
name=NC_012967:3274491..3275300
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|3274491|3275300|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|3274491|3275300|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 3224426..3225235 <gbrowseImage>
name=NC_012759:3224426..3225235
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|012759|3224426|NC_3225235|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|012759|3224426|NC_3225235|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3339920..3339111 <gbrowseImage>
name=AC_000091:3339111..3339920
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|ecoli_W3110|AC_000091|3338111|3340920|GBrowse(W3110)}}
|
{{GBrowseFastaLink|ecoli_W3110|AC_000091|3339111|3339920|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 3435832..3435023 <gbrowseImage>
name=NC_010473:3435023..3435832
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|ecoli_DH10B|NC_010473|3433405|3437450|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|ecoli_DH10B|NC_010473|3433405|3437450|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16943.G46a9efed00c75&page=16943&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="R46a9efedb3e46" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16943.R46a9efedb3e46&page=16943&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="C46a9efee07f61" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
ΔyrbF (Keio:JW3162)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=108681 CGSC10400]<ref name='LIB:cgsc'/>
|

|-
|
''ΔyrbF725::kan''
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:106050|CGSC:106050]]
|

|-
|
''mlaF(del)''
|

|

|
Growth Phenotype
|
Increase outer membrane permeability.
|
PMID:19383799
|
Parental Strain: JCM158 a deriv of keo collection.

Experimental Strain: JCM531
|
Figure 1 and 3.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16943.C46a9efee07f61&page=16943&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="Q4e04bf5688e26" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.16943.Q4e04bf5688e26&page=16943&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="T46a9efeebb00f" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW3162
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCGAGCAGTCTGTGGCGAATTT

Primer 2:CCACTCCCTGGTAAAAGATCAGC
|-
|
[[:Category:Kohara_Phage:7E3|7E3]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=522 Genobase]
|
PMID:3038334
|-
|
[[sfsB:Gene|sfsB203::Tn10]]
|
Linked marker
|
CAG12072 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38770 CGSC7440]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 82% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zgj-203::Tn10, zha-203::Tn10
|-
|
[[yhcF:Gene|zhc-6::Tn10]]
|
Linked marker
|
CAG12153 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38765 CGSC7442]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 36% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zha-6::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16943.T46a9efeebb00f&page=16943&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="J46a9efef62117" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12801 EcoCyc:EG12801]
|

|-
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB2653 EchoBASE:EB2653]
|

|-
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b3195 EcoliGenExpDB:b3195]
|

|-
|
[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOL199310/new-image?object=C3955 ECOL199310CYC:C3955]
|

|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG12801 EcoGene:EG12801]
|

|-
|
[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOO157/new-image?object=YRBF ECOO157CYC:YRBF]
|

|-
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0010498&formSubmitReturn=1 ASAP:ABE-0010498]
|

|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12801 ECOCYC:EG12801]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=947729 GeneID:947729]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16943.J46a9efef62117&page=16943&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="K46a70b6882c13" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16943.K46a70b6882c13&page=16943&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:yrb genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:y genes]]
[[Category:y genes]]
[[Category:Gene_List:BW2952]]

mlaB:Gene

2013-05-10T22:29:31Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|mlaB}}{{Tab On|Gene|mlaB}}{{Tab|Gene Product(s)|mlaB}}{{Tab|Expression|mlaB}}{{Tab|Evolution|mlaB}}{{Tab|On One Page|mlaB}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="J46a9efd37717f" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''mlaB''
|-
!align=left {{table_heading_style}} |Mnemonic
||

|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK3180, b3191, JW5535'', yrbB<ref name='LIB:Riley_2006'/>, JW5535, yrbB''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16935.J46a9efd37717f&page=16935&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="M46a9efd4040f4" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
71.88 minutes 
|
MG1655: 3335278..3334985 <gbrowseImage>
name=NC_000913:3334985..3335278
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G7658 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|3333985|3336278|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|ecoli|NC_000913|3334985|3335278|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=G7658 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 3272491..3272198 <gbrowseImage>
name=NC_012967:3272198..3272491
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|3272198|3272491|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|3272198|3272491|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 3222133..3222426 <gbrowseImage>
name=NC_012759:3222133..3222426
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|012759|3222133|NC_3222426|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|012759|3222133|NC_3222426|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3337111..3336818 <gbrowseImage>
name=AC_000091:3336818..3337111
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|ecoli_W3110|AC_000091|3335818|3338111|GBrowse(W3110)}}
|
{{GBrowseFastaLink|ecoli_W3110|AC_000091|3336818|3337111|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 3433023..3432730 <gbrowseImage>
name=NC_010473:3432730..3433023
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|ecoli_DH10B|NC_010473|3432144|3433609|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|ecoli_DH10B|NC_010473|3432144|3433609|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16935.M46a9efd4040f4&page=16935&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="J46a9efd4b7e8e" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16935.J46a9efd4b7e8e&page=16935&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="X46a9efd50c74f" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
''mlaC(del)''
|

|

|
Growth Phenotype
|
Increase outer membrane permeability.
|
PMID:19383799
|

|
Figure 1 and 3.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16935.X46a9efd50c74f&page=16935&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="A4e04bf5244d21" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.16935.A4e04bf5244d21&page=16935&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="L46a9efd5c01fe" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW5535
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCAGCGAGTCACTGAGCTGGATgca

Primer 2:CCACGAGGCAGAACATCAGCAGG
|-
|
[[:Category:Kohara_Phage:14F11|14F11]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=521 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:7E3|7E3]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=522 Genobase]
|
PMID:3038334
|-
|
[[sfsB:Gene|sfsB203::Tn10]]
|
Linked marker
|
CAG12072 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38770 CGSC7440]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 89% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zgj-203::Tn10, zha-203::Tn10
|-
|
[[yhcF:Gene|zhc-6::Tn10]]
|
Linked marker
|
CAG12153 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38765 CGSC7442]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 33% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zha-6::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16935.L46a9efd5c01fe&page=16935&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="P46a9efd6673ff" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7658 EcoCyc:G7658]
|

|-
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB2649 EchoBASE:EB2649]
|

|-
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b3191 EcoliGenExpDB:b3191]
|

|-
|
[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOL199310/new-image?object=C3950 ECOL199310CYC:C3950]
|

|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG12797 EcoGene:EG12797]
|

|-
|
[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOO157/new-image?object=YRBB ECOO157CYC:YRBB]
|

|-
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0010487&formSubmitReturn=1 ASAP:ABE-0010487]
|

|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7658 ECOCYC:G7658]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=947954 GeneID:947954]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16935.P46a9efd6673ff&page=16935&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="G46a70b51eec70" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16935.G46a70b51eec70&page=16935&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes not in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:yrb genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:y genes]]
[[Category:y genes]]
[[Category:Gene_List:BW2952]]

mlaC:Gene

2013-05-10T22:29:22Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|mlaC}}{{Tab On|Gene|mlaC}}{{Tab|Gene Product(s)|mlaC}}{{Tab|Expression|mlaC}}{{Tab|Evolution|mlaC}}{{Tab|On One Page|mlaC}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="Q46a9efd9ad263" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''mlaC''
|-
!align=left {{table_heading_style}} |Mnemonic
||

|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK3181, b3192, JW3159'', yrbC<ref name='LIB:Riley_2006'/>, JW3159, yrbC''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16937.Q46a9efd9ad263&page=16937&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="O46a9efda39700" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
71.89 minutes 
|
MG1655: 3335913..3335278 <gbrowseImage>
name=NC_000913:3335278..3335913
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G7659 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|3334278|3336913|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|ecoli|NC_000913|3335278|3335913|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=G7659 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 3273126..3272491 <gbrowseImage>
name=NC_012967:3272491..3273126
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|3272491|3273126|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|3272491|3273126|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 3222426..3223061 <gbrowseImage>
name=NC_012759:3222426..3223061
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|012759|3222426|NC_3223061|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|012759|3222426|NC_3223061|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3337746..3337111 <gbrowseImage>
name=AC_000091:3337111..3337746
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|ecoli_W3110|AC_000091|3336111|3338746|GBrowse(W3110)}}
|
{{GBrowseFastaLink|ecoli_W3110|AC_000091|3337111|3337746|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 3433658..3433023 <gbrowseImage>
name=NC_010473:3433023..3433658
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|ecoli_DH10B|NC_010473|3431753|3434928|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|ecoli_DH10B|NC_010473|3431753|3434928|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16937.O46a9efda39700&page=16937&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="L46a9efdaed168" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16937.L46a9efdaed168&page=16937&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="U46a9efdb4159c" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
''ΔyrbC722::kan''
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:106044|CGSC:106044]]
|

|-
|
''mlaC(del)''
|

|

|
Growth Phenotype
|
Increase outer membrane permeability.
|
PMID:19383799
|

|
Figure 1 and 3.
|-
|
ΔyrbC (Keio:JW3159)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=108678 CGSC10397]<ref name='LIB:cgsc'/>
|

|-
|
''mlaC(del)'' ''pldA''
|

|

|
Growth Phenotype
|
Increase outer membrane permeability. Increase was more than single gene mutations.
|
PMID:19383799
|

|
Figure 1 and 3.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16937.U46a9efdb4159c&page=16937&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="Y4e04bf53524a0" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.16937.Y4e04bf53524a0&page=16937&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="L46a9efdc00242" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW3159
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCTTTAAACGTTTAATGATGGT

Primer 2:CCTTTTTTCTCTTCCAGAGTGAT
|-
|
[[:Category:Kohara_Phage:14F11|14F11]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=521 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:7E3|7E3]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=522 Genobase]
|
PMID:3038334
|-
|
[[sfsB:Gene|sfsB203::Tn10]]
|
Linked marker
|
CAG12072 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38770 CGSC7440]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 88% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zgj-203::Tn10, zha-203::Tn10
|-
|
[[yhcF:Gene|zhc-6::Tn10]]
|
Linked marker
|
CAG12153 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38765 CGSC7442]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 33% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zha-6::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16937.L46a9efdc00242&page=16937&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="J46a9efdc9b36e" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7659 EcoCyc:G7659]
|

|-
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB2650 EchoBASE:EB2650]
|

|-
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b3192 EcoliGenExpDB:b3192]
|

|-
|
[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOL199310/new-image?object=C3952 ECOL199310CYC:C3952]
|

|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG12798 EcoGene:EG12798]
|

|-
|
[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOO157/new-image?object=YRBC ECOO157CYC:YRBC]
|

|-
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0010489&formSubmitReturn=1 ASAP:ABE-0010489]
|

|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7659 ECOCYC:G7659]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=947710 GeneID:947710]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16937.J46a9efdc9b36e&page=16937&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="V46a70b5791978" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16937.V46a70b5791978&page=16937&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:yrb genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:y genes]]
[[Category:y genes]]
[[Category:Gene_List:BW2952]]

mlaC:Gene

2013-05-10T22:27:56Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|mlaC}}{{Tab On|Gene|mlaC}}{{Tab|Gene Product(s)|mlaC}}{{Tab|Expression|mlaC}}{{Tab|Evolution|mlaC}}{{Tab|On One Page|mlaC}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="Q46a9efd9ad263" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''mlaC''
|-
!align=left {{table_heading_style}} |Mnemonic
||

|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK3181, b3192, JW3159'', yrbC<ref name='LIB:Riley_2006'/>, JW3159, yrbC''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16937.Q46a9efd9ad263&page=16937&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="O46a9efda39700" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
71.89 minutes 
|
MG1655: 3335913..3335278 <gbrowseImage>
name=NC_000913:3335278..3335913
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G7659 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|3334278|3336913|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|ecoli|NC_000913|3335278|3335913|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=G7659 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 3273126..3272491 <gbrowseImage>
name=NC_012967:3272491..3273126
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|3272491|3273126|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|3272491|3273126|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 3222426..3223061 <gbrowseImage>
name=NC_012759:3222426..3223061
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|012759|3222426|NC_3223061|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|012759|3222426|NC_3223061|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3337746..3337111 <gbrowseImage>
name=AC_000091:3337111..3337746
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|ecoli_W3110|AC_000091|3336111|3338746|GBrowse(W3110)}}
|
{{GBrowseFastaLink|ecoli_W3110|AC_000091|3337111|3337746|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 3433658..3433023 <gbrowseImage>
name=NC_010473:3433023..3433658
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|ecoli_DH10B|NC_010473|3431753|3434928|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|ecoli_DH10B|NC_010473|3431753|3434928|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16937.O46a9efda39700&page=16937&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="L46a9efdaed168" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16937.L46a9efdaed168&page=16937&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="U46a9efdb4159c" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
ΔyrbC (Keio:JW3159)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=108678 CGSC10397]<ref name='LIB:cgsc'/>
|

|-
|
''ΔyrbC722::kan''
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:106044|CGSC:106044]]
|

|-
|
''mlaC(del)''
|

|

|
Growth Phenotype
|
Increase outer membrane permeability.
|
PMID:19383799
|

|
Figure 1 and 3.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16937.U46a9efdb4159c&page=16937&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="Y4e04bf53524a0" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.16937.Y4e04bf53524a0&page=16937&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="L46a9efdc00242" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW3159
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCTTTAAACGTTTAATGATGGT

Primer 2:CCTTTTTTCTCTTCCAGAGTGAT
|-
|
[[:Category:Kohara_Phage:14F11|14F11]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=521 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:7E3|7E3]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=522 Genobase]
|
PMID:3038334
|-
|
[[sfsB:Gene|sfsB203::Tn10]]
|
Linked marker
|
CAG12072 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38770 CGSC7440]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 88% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zgj-203::Tn10, zha-203::Tn10
|-
|
[[yhcF:Gene|zhc-6::Tn10]]
|
Linked marker
|
CAG12153 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38765 CGSC7442]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 33% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zha-6::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16937.L46a9efdc00242&page=16937&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="J46a9efdc9b36e" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7659 EcoCyc:G7659]
|

|-
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB2650 EchoBASE:EB2650]
|

|-
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b3192 EcoliGenExpDB:b3192]
|

|-
|
[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOL199310/new-image?object=C3952 ECOL199310CYC:C3952]
|

|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG12798 EcoGene:EG12798]
|

|-
|
[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOO157/new-image?object=YRBC ECOO157CYC:YRBC]
|

|-
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0010489&formSubmitReturn=1 ASAP:ABE-0010489]
|

|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7659 ECOCYC:G7659]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=947710 GeneID:947710]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16937.J46a9efdc9b36e&page=16937&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="V46a70b5791978" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16937.V46a70b5791978&page=16937&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:yrb genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:y genes]]
[[Category:y genes]]
[[Category:Gene_List:BW2952]]

mlaA:Gene

2013-05-10T22:26:28Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|mlaA}}{{Tab On|Gene|mlaA}}{{Tab|Gene Product(s)|mlaA}}{{Tab|Expression|mlaA}}{{Tab|Evolution|mlaA}}{{Tab|On One Page|mlaA}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="D46a9dbe6bfcfe" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''mlaA''
|-
!align=left {{table_heading_style}} |Mnemonic
||

|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK2340, b2346, JW2343'', vacJ<ref name='LIB:Riley_2006'/>, JW2343, vacJ''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15255.D46a9dbe6bfcfe&page=15255&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="I46a9dbe7495e4" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
53.07 minutes, 53.07 minutes 
|
MG1655: 2463029..2462274 <gbrowseImage>
name=NC_000913:2462274..2463029
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G7216 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|2461274|2464029|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|ecoli|NC_000913|2462274|2463029|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=G7216 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 2409449..2408694 <gbrowseImage>
name=NC_012967:2408694..2409449
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|2408694|2409449|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|2408694|2409449|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 2348079..2348834 <gbrowseImage>
name=NC_012759:2348079..2348834
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|012759|2348079|NC_2348834|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|012759|2348079|NC_2348834|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 2470453..2469698 <gbrowseImage>
name=AC_000091:2469698..2470453
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|ecoli_W3110|AC_000091|2468698|2471453|GBrowse(W3110)}}
|
{{GBrowseFastaLink|ecoli_W3110|AC_000091|2469698|2470453|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 2554794..2554039 <gbrowseImage>
name=NC_010473:2554039..2554794
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|ecoli_DH10B|NC_010473|2552529|2556304|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|ecoli_DH10B|NC_010473|2552529|2556304|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15255.I46a9dbe7495e4&page=15255&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="G46a9dbe800bed" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15255.G46a9dbe800bed&page=15255&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="B46a9dbe846513" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
ΔvacJ (Keio:JW2343)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]
|

|-
|
''mlaC(del)''
|

|

|
Growth Phenotype
|
Increase outer membrane permeability.
|
PMID:19383799
|

|
Figure 1 and 3.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15255.B46a9dbe846513&page=15255&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="F4e04bf51303ec" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.15255.F4e04bf51303ec&page=15255&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="J46a9dbe8f1d12" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW2343
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCAAGCTTCGCCTGTCGGCGCT

Primer 2:CCTTCAGAATCAATATCTTTTAA
|-
|
[[:Category:Kohara_Phage:6F7|6F7]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=410 Genobase]
|
PMID:3038334
|-
|
[[yfbO:Gene|zfb-223::Tn10]]
|
Linked marker
|
CAG18484 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40073 CGSC7406]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 1% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zej-223::Tn10
|-
|
zfd-1::Tn10
|
Linked marker
|
CAG18467 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40075 CGSC7408]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 32% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zfb-1::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15255.J46a9dbe8f1d12&page=15255&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="L46a9dbe99261b" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7216 EcoCyc:G7216]
|

|-
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB4024 EchoBASE:EB4024]
|

|-
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b2346 EcoliGenExpDB:b2346]
|

|-
|
[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOL199310/new-image?object=C2890 ECOL199310CYC:C2890]
|

|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG14276 EcoGene:EG14276]
|

|-
|
[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOO157/new-image?object=VACJ ECOO157CYC:VACJ]
|

|-
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0007745&formSubmitReturn=1 ASAP:ABE-0007745]
|

|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7216 ECOCYC:G7216]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=945582 GeneID:945582]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15255.L46a9dbe99261b&page=15255&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="D46a6f8ffb022b" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15255.D46a6f8ffb022b&page=15255&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:vac genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

mlaD:Gene

2013-05-10T22:24:19Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|mlaD}}{{Tab On|Gene|mlaD}}{{Tab|Gene Product(s)|mlaD}}{{Tab|Expression|mlaD}}{{Tab|Evolution|mlaD}}{{Tab|On One Page|mlaD}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="J46a9efdfe38b3" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''mlaD''
|-
!align=left {{table_heading_style}} |Mnemonic
||

|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK3182, b3193, JW3160, vpsC(S.f.)'', yrbD<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, vpsC, yrbD''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16939.J46a9efdfe38b3&page=16939&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="V46a9efe06f932" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
71.9 minutes 
|
MG1655: 3336483..3335932 <gbrowseImage>
name=NC_000913:3335932..3336483
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG12799 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|3334932|3337483|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|ecoli|NC_000913|3335932|3336483|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG12799 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 3273696..3273145 <gbrowseImage>
name=NC_012967:3273145..3273696
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|3273145|3273696|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|3273145|3273696|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 3223080..3223631 <gbrowseImage>
name=NC_012759:3223080..3223631
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|012759|3223080|NC_3223631|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|012759|3223080|NC_3223631|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3338316..3337765 <gbrowseImage>
name=AC_000091:3337765..3338316
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|ecoli_W3110|AC_000091|3336765|3339316|GBrowse(W3110)}}
|
{{GBrowseFastaLink|ecoli_W3110|AC_000091|3337765|3338316|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 3434228..3433677 <gbrowseImage>
name=NC_010473:3433677..3434228
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|ecoli_DH10B|NC_010473|3432575|3435330|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|ecoli_DH10B|NC_010473|3432575|3435330|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16939.V46a9efe06f932&page=16939&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="R46a9efe12eab4" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16939.R46a9efe12eab4&page=16939&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="K46a9efe176ccd" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
ΔyrbD (Keio:JW3160)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=108679 CGSC10398]<ref name='LIB:cgsc'/>
|

|-
|
''ΔyrbD723::kan''
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:106046|CGSC:106046]]
|

|-
|
''mlaE(del)''
|

|

|
Growth Phenotype
|
Increase outer membrane permeability.
|
PMID:19383799
|

|
Figure 1 and 3.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16939.K46a9efe176ccd&page=16939&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="K4e04bf5460c1e" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.16939.K4e04bf5460c1e&page=16939&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="J46a9efe235a23" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW3160
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCCAAACGAAAAAAAATGAAAT

Primer 2:CCTTTCGTTGTACCCACAGGTTC
|-
|
[[:Category:Kohara_Phage:14F11|14F11]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=521 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:7E3|7E3]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=522 Genobase]
|
PMID:3038334
|-
|
[[sfsB:Gene|sfsB203::Tn10]]
|
Linked marker
|
CAG12072 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38770 CGSC7440]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 86% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zgj-203::Tn10, zha-203::Tn10
|-
|
[[yhcF:Gene|zhc-6::Tn10]]
|
Linked marker
|
CAG12153 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38765 CGSC7442]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 34% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zha-6::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16939.J46a9efe235a23&page=16939&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="E46a9efe2d0f40" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12799 EcoCyc:EG12799]
|

|-
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB2651 EchoBASE:EB2651]
|

|-
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b3193 EcoliGenExpDB:b3193]
|

|-
|
[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOL199310/new-image?object=C3953 ECOL199310CYC:C3953]
|

|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG12799 EcoGene:EG12799]
|

|-
|
[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOO157/new-image?object=YRBD ECOO157CYC:YRBD]
|

|-
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0010493&formSubmitReturn=1 ASAP:ABE-0010493]
|

|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12799 ECOCYC:EG12799]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=947712 GeneID:947712]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16939.E46a9efe2d0f40&page=16939&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="J46a70b5d3b93d" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16939.J46a70b5d3b93d&page=16939&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:yrb genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:y genes]]
[[Category:y genes]]
[[Category:Gene_List:BW2952]]

mlaE:Gene

2013-05-10T22:21:40Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|mlaE}}{{Tab On|Gene|mlaE}}{{Tab|Gene Product(s)|mlaE}}{{Tab|Expression|mlaE}}{{Tab|Evolution|mlaE}}{{Tab|On One Page|mlaE}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="D46a9efe625497" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''mlaE''
|-
!align=left {{table_heading_style}} |Mnemonic
||

|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK3183, b3194, JW3161, vpsB(S.f.)'', yrbE<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, vpsB, yrbE''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16941.D46a9efe625497&page=16941&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="E46a9efe6a57d1" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
71.91 minutes 
|
MG1655: 3337270..3336488 <gbrowseImage>
name=NC_000913:3336488..3337270
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG12800 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|3335488|3338270|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|ecoli|NC_000913|3336488|3337270|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG12800 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 3274483..3273701 <gbrowseImage>
name=NC_012967:3273701..3274483
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|3273701|3274483|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|3273701|3274483|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 3223636..3224418 <gbrowseImage>
name=NC_012759:3223636..3224418
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|012759|3223636|NC_3224418|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|012759|3223636|NC_3224418|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3339103..3338321 <gbrowseImage>
name=AC_000091:3338321..3339103
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|ecoli_W3110|AC_000091|3337321|3340103|GBrowse(W3110)}}
|
{{GBrowseFastaLink|ecoli_W3110|AC_000091|3338321|3339103|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 3435015..3434233 <gbrowseImage>
name=NC_010473:3434233..3435015
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|ecoli_DH10B|NC_010473|3432669|3436579|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|ecoli_DH10B|NC_010473|3432669|3436579|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16941.E46a9efe6a57d1&page=16941&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="D46a9efe764834" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16941.D46a9efe764834&page=16941&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Z46a9efe7ac8cf" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
ΔyrbE (Keio:JW3161)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=108680 CGSC10399]<ref name='LIB:cgsc'/>
|

|-
|
''ΔyrbE724::kan''
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:106048|CGSC:106048]]
|

|-
|
''mlaE(del)''
|

|

|
Growth Phenotype
|
Increase outer membrane permeability.
|
PMID:19383799
|

|
Figure 1 and 3.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16941.Z46a9efe7ac8cf&page=16941&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="O4e04bf5578e9d" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.16941.O4e04bf5578e9d&page=16941&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="I46a9efe884a0c" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW3161
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCCTGTTAAATGCGCTGGCGTC

Primer 2:CCATTCCCAAACATCAATGCGGT
|-
|
[[:Category:Kohara_Phage:14F11|14F11]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=521 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:7E3|7E3]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=522 Genobase]
|
PMID:3038334
|-
|
[[sfsB:Gene|sfsB203::Tn10]]
|
Linked marker
|
CAG12072 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38770 CGSC7440]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 84% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zgj-203::Tn10, zha-203::Tn10
|-
|
[[yhcF:Gene|zhc-6::Tn10]]
|
Linked marker
|
CAG12153 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38765 CGSC7442]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 35% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zha-6::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16941.I46a9efe884a0c&page=16941&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="P46a9efe92b76f" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12800 EcoCyc:EG12800]
|

|-
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB2652 EchoBASE:EB2652]
|

|-
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b3194 EcoliGenExpDB:b3194]
|

|-
|
[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOL199310/new-image?object=C3954 ECOL199310CYC:C3954]
|

|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG12800 EcoGene:EG12800]
|

|-
|
[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOO157/new-image?object=YRBE ECOO157CYC:YRBE]
|

|-
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0010495&formSubmitReturn=1 ASAP:ABE-0010495]
|

|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12800 ECOCYC:EG12800]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=947732 GeneID:947732]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16941.P46a9efe92b76f&page=16941&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="T46a70b62dbc30" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16941.T46a70b62dbc30&page=16941&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:yrb genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:y genes]]
[[Category:y genes]]
[[Category:Gene_List:BW2952]]

mlaF:Gene

2013-05-10T22:14:45Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|mlaF}}{{Tab On|Gene|mlaF}}{{Tab|Gene Product(s)|mlaF}}{{Tab|Expression|mlaF}}{{Tab|Evolution|mlaF}}{{Tab|On One Page|mlaF}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="Z46a9efec74c5c" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''mlaF''
|-
!align=left {{table_heading_style}} |Mnemonic
||

|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK3184, b3195, JW3162, vpsA(S.f.)'', yrbF<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, vpsA, yrbF''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16943.Z46a9efec74c5c&page=16943&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="G46a9efed00c75" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
71.93 minutes 
|
MG1655: 3338087..3337278 <gbrowseImage>
name=NC_000913:3337278..3338087
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG12801 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|3336278|3339087|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|ecoli|NC_000913|3337278|3338087|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG12801 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 3275300..3274491 <gbrowseImage>
name=NC_012967:3274491..3275300
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|3274491|3275300|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|3274491|3275300|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 3224426..3225235 <gbrowseImage>
name=NC_012759:3224426..3225235
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|012759|3224426|NC_3225235|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|012759|3224426|NC_3225235|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3339920..3339111 <gbrowseImage>
name=AC_000091:3339111..3339920
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|ecoli_W3110|AC_000091|3338111|3340920|GBrowse(W3110)}}
|
{{GBrowseFastaLink|ecoli_W3110|AC_000091|3339111|3339920|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 3435832..3435023 <gbrowseImage>
name=NC_010473:3435023..3435832
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|ecoli_DH10B|NC_010473|3433405|3437450|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|ecoli_DH10B|NC_010473|3433405|3437450|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16943.G46a9efed00c75&page=16943&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="R46a9efedb3e46" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16943.R46a9efedb3e46&page=16943&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="C46a9efee07f61" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
ΔyrbF (Keio:JW3162)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=108681 CGSC10400]<ref name='LIB:cgsc'/>
|

|-
|
''ΔyrbF725::kan''
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:106050|CGSC:106050]]
|

|-
|
''mlaF(del)''
|

|

|
Growth Phenotype
|
Increase outer membrane permeability.
|
PMID:19383799
|

|
Figure 1 and 3.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16943.C46a9efee07f61&page=16943&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="Q4e04bf5688e26" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.16943.Q4e04bf5688e26&page=16943&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="T46a9efeebb00f" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW3162
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCGAGCAGTCTGTGGCGAATTT

Primer 2:CCACTCCCTGGTAAAAGATCAGC
|-
|
[[:Category:Kohara_Phage:7E3|7E3]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=522 Genobase]
|
PMID:3038334
|-
|
[[sfsB:Gene|sfsB203::Tn10]]
|
Linked marker
|
CAG12072 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38770 CGSC7440]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 82% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zgj-203::Tn10, zha-203::Tn10
|-
|
[[yhcF:Gene|zhc-6::Tn10]]
|
Linked marker
|
CAG12153 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38765 CGSC7442]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 36% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zha-6::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16943.T46a9efeebb00f&page=16943&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="J46a9efef62117" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12801 EcoCyc:EG12801]
|

|-
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB2653 EchoBASE:EB2653]
|

|-
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b3195 EcoliGenExpDB:b3195]
|

|-
|
[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOL199310/new-image?object=C3955 ECOL199310CYC:C3955]
|

|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG12801 EcoGene:EG12801]
|

|-
|
[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOO157/new-image?object=YRBF ECOO157CYC:YRBF]
|

|-
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0010498&formSubmitReturn=1 ASAP:ABE-0010498]
|

|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12801 ECOCYC:EG12801]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=947729 GeneID:947729]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16943.J46a9efef62117&page=16943&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="K46a70b6882c13" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.16943.K46a70b6882c13&page=16943&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:yrb genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:y genes]]
[[Category:y genes]]
[[Category:Gene_List:BW2952]]

mppA:Gene

2013-05-02T18:31:41Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|mppA}}{{Tab On|Gene|mppA}}{{Tab|Gene Product(s)|mppA}}{{Tab|Expression|mppA}}{{Tab|Evolution|mppA}}{{Tab|On One Page|mppA}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="V46a9c4cf944ae" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''mppA''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Murein peptide permease
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK1326, b1329, JW1322, ynaH''<ref name='LIB:Riley_2006'/>, ynaH''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.13229.V46a9c4cf944ae&page=13229&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="V46a9c4d019afd" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
29.99 minutes 
|
MG1655: 1391251..1392864 <gbrowseImage>
name=NC_000913:1391251..1392864
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G6665 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|1390251|1393864|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|1391251|1392864|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=G6665 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 1391596..1393209 <gbrowseImage>
name=NC_012967:1391596..1393209
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|1391596|1393209|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|1391596|1393209|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 1282100..1283713 <gbrowseImage>
name=NC_012759:1282100..1283713
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|1282100|1283713|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|1282100|1283713|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 1394941..1396554 <gbrowseImage>
name=AC_000091:1394941..1396554
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|1393941|1397554|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|1394941|1396554|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 1480647..1482260 <gbrowseImage>
name=NC_010473:1480647..1482260
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|1477421|1485486|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|1477421|1485486|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.13229.V46a9c4d019afd&page=13229&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="G46a9c4d0bbcf0" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
1391317
|
Edman degradation
|
PMID:9495761 
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.13229.G46a9c4d0bbcf0&page=13229&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="N46a9c4d109bdf" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
ΔmppA (Keio:JW1322)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=107464 CGSC9183]<ref name='LIB:cgsc'/>
|

|-
|
''ΔmppA767::kan''
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:101936|CGSC:101936]]
|

|-
|
''dppA::Kan mppA::Cm''
|

|

|
Auxotrophies
|
Abolished heme utilization.
|

|
PMID:16905647
|
See table 1.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.13229.N46a9c4d109bdf&page=13229&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="Y4e04bf8cda129" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.13229.Y4e04bf8cda129&page=13229&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="V46a9c4d1ac15f" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW1322
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCAAGCACTCTGTTTCAGTCAC

Primer 2:CCATGCTTCACAATATACATAGT
|-
|
[[:Category:Kohara_Phage:6B4|6B4]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=260 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:3G3|3G3]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=261 Genobase]
|
PMID:3038334
|-
|
[[ycjM:Gene|zcj-233::Tn10]]
|
Linked marker
|
CAG12028 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39843 CGSC7373]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 43% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zci-233::Tn10
|-
|
[[recT:Gene|recT3061::Tn10]]
|
Linked marker
|
CAG12081 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39818 CGSC7375]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 50% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zcj-3061::Tn10, zda-3061::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.13229.V46a9c4d1ac15f&page=13229&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="V46a9c4d24507a" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6665 ECOCYC:G6665]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG13376 EcoGene:EG13376]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=945951 GeneID:945951]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.13229.V46a9c4d24507a&page=13229&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="N46a6e24c48cec" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.13229.N46a6e24c48cec&page=13229&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:mpp genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

dppA:Gene

2013-05-02T18:30:26Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|dppA}}{{Tab On|Gene|dppA}}{{Tab|Gene Product(s)|dppA}}{{Tab|Expression|dppA}}{{Tab|Evolution|dppA}}{{Tab|On One Page|dppA}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="U46a9f89aeca07" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''dppA''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Dipeptide permease system
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK3531, b3544, JW3513, alu, dpp, fpp''<ref name='LIB:Riley_2006'/>, fpp''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17637.U46a9f89aeca07&page=17637&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="J46a9f89b7a675" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
79.84 minutes 
|
MG1655: 3705728..3704121 <gbrowseImage>
name=NC_000913:3704121..3705728
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10248 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|3703121|3706728|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|3704121|3705728|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10248 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 3638163..3636556 <gbrowseImage>
name=NC_012967:3636556..3638163
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|3636556|3638163|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|3636556|3638163|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 3592615..3594222 <gbrowseImage>
name=NC_012759:3592615..3594222
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|3592615|3594222|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|3592615|3594222|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3932710..3934317 <gbrowseImage>
name=AC_000091:3932710..3934317
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|3931710|3935317|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|3932710|3934317|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 3803473..3801866 <gbrowseImage>
name=NC_010473:3801866..3803473
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|3798652|3806687|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|3798652|3806687|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17637.J46a9f89b7a675&page=17637&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="H46a9f89c3cb55" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
3704124
|
Edman degradation
|
PMID:1956284 PMID:9298646 PMID:9600841 PMID:9740056 PMID:10972807 
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17637.H46a9f89c3cb55&page=17637&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="L46a9f89c8611e" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
''dppA(del)'' (Keio:JW3513)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]

[http://cgsc2.biology.yale.edu/Strain.php?ID=108880 CGSC10599]<ref name='LIB:cgsc'/>
|

|-
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0011576 dppA::Tn5KAN-I-SceI] (FB21271)
|
Insertion at nt 837 in Minus orientation
|

|

|

|
PMID:15262929
|
[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB21271]
|
does not contain [[pKD46]]
|-
|
''dppA728(del)::kan''
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:100636|CGSC:100636]]
|

|-
|
''dppA'' in strain PA0113
|

|

|
Resistant to
|
Lysyl-2-aminooxypronate resistance
|
PMID:6389761
|
PA0113
|

|-
|
''dppA::Kan mppA::Cm''
|

|

|
Auxotrophies
|
Abolished heme utilization.
|
PMID:16905647
|

|
See Table 1.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17637.L46a9f89c8611e&page=17637&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="G4e04ba0c1a7dd" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.17637.G4e04ba0c1a7dd&page=17637&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="K46a9f89d482fc" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW3513
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCCGTATTTCCTTGAAAAAGTC

Primer 2:CCTTCGATAGAGACGTTTTCGAA
|-
|
[[:Category:Kohara_Phage:9F6|9F6]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=602 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:1D1|1D1]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=603 Genobase]
|
PMID:3038334
|-
|
zhg-50::Tn10
|
Linked marker
|
CAG18450 = [http://cgsc2.biology.yale.edu/Strain.php?ID=37863 CGSC7450]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zhf-50::Tn10, zhf-5::Tn10
|-
|
zic-4901::Tn10
|
Linked marker
|
CAG18492 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38944 CGSC7457]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/>

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17637.K46a9f89d482fc&page=17637&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="Y46a9f89de629b" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10248 ECOCYC:EG10248]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG10248 EcoGene:EG10248]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=948062 GeneID:948062]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17637.Y46a9f89de629b&page=17637&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="R46a713441917d" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17637.R46a713441917d&page=17637&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:dpp genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

dppF:Gene

2013-05-02T18:27:46Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|dppF}}{{Tab On|Gene|dppF}}{{Tab|Gene Product(s)|dppF}}{{Tab|Expression|dppF}}{{Tab|Evolution|dppF}}{{Tab|On One Page|dppF}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="J46a9f87ed9411" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''dppF''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Dipeptide permease system
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK3527, b3540, JW3509, dppE''<ref name='LIB:Riley_2006'/>

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17629.J46a9f87ed9411&page=17629&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="K46a9f87f665ab" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
79.74 minutes 
|
MG1655: 3700891..3699887 <gbrowseImage>
name=NC_000913:3699887..3700891
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG12628 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|3698887|3701891|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|3699887|3700891|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG12628 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 3633326..3632322 <gbrowseImage>
name=NC_012967:3632322..3633326
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|3632322|3633326|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|3632322|3633326|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 3588381..3589385 <gbrowseImage>
name=NC_012759:3588381..3589385
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|3588381|3589385|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|3588381|3589385|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3937547..3938551 <gbrowseImage>
name=AC_000091:3937547..3938551
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|3936547|3939551|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|3937547|3938551|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 3798636..3797632 <gbrowseImage>
name=NC_010473:3797632..3798636
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|3795624|3800644|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|3795624|3800644|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17629.K46a9f87f665ab&page=17629&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="M46a9f88028caa" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17629.M46a9f88028caa&page=17629&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="M46a9f88072422" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
ΔdppF (Keio:JW3509)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=108876 CGSC10595]<ref name='LIB:cgsc'/>
|

|-
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0011564 dppF::Tn5KAN-I-SceI] (FB21266)
|
Insertion at nt 329 in Plus orientation
|

|

|

|
PMID:15262929
|
[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB21266]
|
contains [[pKD46]]
|-
|
''ΔdppF723::kan''
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:100644|CGSC:100644]]
|

|-
|
''dppF::Kan''
|

|

|
Auxotrophies
|
Abolished heme utilization.
|
PMID:16905647
|
Experimental Strain: JWN3509-2
|
See table 1.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17629.M46a9f88072422&page=17629&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="G4e04ba11b17c1" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.17629.G4e04ba11b17c1&page=17629&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="G46a9f88134596" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW3509
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCAGTACGCAAGAGGCCACCCT

Primer 2:CCACGCTGCGGATTTTCATCCTG
|-
|
[[:Category:Kohara_Phage:1D1|1D1]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=603 Genobase]
|
PMID:3038334
|-
|
zhg-50::Tn10
|
Linked marker
|
CAG18450 = [http://cgsc2.biology.yale.edu/Strain.php?ID=37863 CGSC7450]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zhf-50::Tn10, zhf-5::Tn10
|-
|
zic-4901::Tn10
|
Linked marker
|
CAG18492 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38944 CGSC7457]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/>

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17629.G46a9f88134596&page=17629&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="U46a9f881d1f3d" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12628 ECOCYC:EG12628]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG12628 EcoGene:EG12628]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=948056 GeneID:948056]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17629.U46a9f881d1f3d&page=17629&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="R46a7132a47e7f" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17629.R46a7132a47e7f&page=17629&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:dpp genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

dppD:Gene

2013-05-02T18:22:38Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|dppD}}{{Tab On|Gene|dppD}}{{Tab|Gene Product(s)|dppD}}{{Tab|Expression|dppD}}{{Tab|Evolution|dppD}}{{Tab|On One Page|dppD}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="H46a9f885db881" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''dppD''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Dipeptide permease system
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK3528, b3541, JW3510''<ref name='LIB:Riley_2006'/>, JW3510''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17631.H46a9f885db881&page=17631&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="Y46a9f886689e0" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
79.77 minutes 
|
MG1655: 3701871..3700888 <gbrowseImage>
name=NC_000913:3700888..3701871
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG12627 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|3699888|3702871|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|3700888|3701871|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG12627 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 3634306..3633323 <gbrowseImage>
name=NC_012967:3633323..3634306
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|3633323|3634306|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|3633323|3634306|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 3589382..3590365 <gbrowseImage>
name=NC_012759:3589382..3590365
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|3589382|3590365|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|3589382|3590365|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3936567..3937550 <gbrowseImage>
name=AC_000091:3936567..3937550
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|3935567|3938550|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|3936567|3937550|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 3799616..3798633 <gbrowseImage>
name=NC_010473:3798633..3799616
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|3796667|3801582|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|3796667|3801582|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17631.Y46a9f886689e0&page=17631&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="F46a9f8872aca2" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17631.F46a9f8872aca2&page=17631&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="U46a9f8877423a" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
ΔdppD (Keio:JW3510)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=108877 CGSC10596]<ref name='LIB:cgsc'/>
|

|-
|
''ΔdppD724::kan''
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:100642|CGSC:100642]]
|

|-
|
''dppD::Kan''
|

|

|
Auxotrophies
|
Abolished heme utilization.
|
PMID:16905647
|
Experimental Strain: JWN3510-2
|
See Table 1.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17631.U46a9f8877423a&page=17631&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="P4e04ba103607c" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.17631.P4e04ba103607c&page=17631&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="P46a9f88836084" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW3510
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCGCGTTATTAAATGTAGATAA

Primer 2:CCTAGTGTCGGCCTCCCGGCATC
|-
|
[[:Category:Kohara_Phage:1D1|1D1]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=603 Genobase]
|
PMID:3038334
|-
|
zhg-50::Tn10
|
Linked marker
|
CAG18450 = [http://cgsc2.biology.yale.edu/Strain.php?ID=37863 CGSC7450]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zhf-50::Tn10, zhf-5::Tn10
|-
|
zic-4901::Tn10
|
Linked marker
|
CAG18492 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38944 CGSC7457]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/>

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17631.P46a9f88836084&page=17631&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="Z46a9f888d39d6" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12627 ECOCYC:EG12627]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG12627 EcoGene:EG12627]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=948065 GeneID:948065]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17631.Z46a9f888d39d6&page=17631&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="C46a71330b268e" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17631.C46a71330b268e&page=17631&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:dpp genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

dppC:Gene

2013-05-02T18:19:08Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|dppC}}{{Tab On|Gene|dppC}}{{Tab|Gene Product(s)|dppC}}{{Tab|Expression|dppC}}{{Tab|Evolution|dppC}}{{Tab|On One Page|dppC}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="X46a9f88cdbed1" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''dppC''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Dipeptide permease system
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK3529, b3542, JW3511''<ref name='LIB:Riley_2006'/>, JW3511''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17633.X46a9f88cdbed1&page=17633&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="T46a9f88d68e88" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
79.79 minutes, 79.79 minutes 
|
MG1655: 3702784..3701882 <gbrowseImage>
name=NC_000913:3701882..3702784
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG12626 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|3700882|3703784|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|3701882|3702784|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG12626 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 3635219..3634317 <gbrowseImage>
name=NC_012967:3634317..3635219
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|3634317|3635219|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|3634317|3635219|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 3590376..3591278 <gbrowseImage>
name=NC_012759:3590376..3591278
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|3590376|3591278|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|3590376|3591278|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3935654..3936556 <gbrowseImage>
name=AC_000091:3935654..3936556
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|3934654|3937556|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|3935654|3936556|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 3800529..3799627 <gbrowseImage>
name=NC_010473:3799627..3800529
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|3797823|3802333|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|3797823|3802333|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17633.T46a9f88d68e88&page=17633&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="C46a9f88e2b086" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17633.C46a9f88e2b086&page=17633&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="H46a9f88e747fd" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
ΔdppC (Keio:JW3511)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=108878 CGSC10597]<ref name='LIB:cgsc'/>
|

|-
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0011570 dppC::Tn5KAN-I-SceI] (FB21267)
|
Insertion at nt 201 in Plus orientation
|

|

|

|
PMID:15262929
|
[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB21267]
|
contains [[pKD46]]
|-
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0011570 dppC::Tn5KAN-I-SceI] (FB21268)
|
Insertion at nt 201 in Plus orientation
|

|

|

|
PMID:15262929
|
[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB21268]
|
does not contain [[pKD46]]
|-
|
''ΔdppC725::kan''
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:100640|CGSC:100640]]
|

|-
|
''dppC::Kan''
|

|

|
Auxotrophies
|
Abolished heme utilization.
|
PMID:16905647
|
Experimental Strain: JWN3511-2
|
See Table 1

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17633.H46a9f88e747fd&page=17633&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="N4e04ba0edcc51" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.17633.N4e04ba0edcc51&page=17633&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="C46a9f88f36ad1" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW3511
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCTCACAGGTTACTGAAAATAA

Primer 2:CCtTGCTTCAGTTTGGGATCGAG
|-
|
[[:Category:Kohara_Phage:1D1|1D1]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=603 Genobase]
|
PMID:3038334
|-
|
zhg-50::Tn10
|
Linked marker
|
CAG18450 = [http://cgsc2.biology.yale.edu/Strain.php?ID=37863 CGSC7450]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zhf-50::Tn10, zhf-5::Tn10
|-
|
zic-4901::Tn10
|
Linked marker
|
CAG18492 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38944 CGSC7457]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/>

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17633.C46a9f88f36ad1&page=17633&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="Z46a9f88fd4687" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12626 ECOCYC:EG12626]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG12626 EcoGene:EG12626]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=948064 GeneID:948064]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17633.Z46a9f88fd4687&page=17633&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="I46a713372ab62" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17633.I46a713372ab62&page=17633&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:dpp genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

dppB:Gene

2013-05-02T18:10:00Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|dppB}}{{Tab On|Gene|dppB}}{{Tab|Gene Product(s)|dppB}}{{Tab|Expression|dppB}}{{Tab|Evolution|dppB}}{{Tab|On One Page|dppB}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="E46a9f893ddff8" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''dppB''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Dipeptide permease system
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK3530, b3543, JW3512''<ref name='LIB:Riley_2006'/>, JW3512''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17635.E46a9f893ddff8&page=17635&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="N46a9f8946b4e3" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
79.81 minutes 
|
MG1655: 3703813..3702794 <gbrowseImage>
name=NC_000913:3702794..3703813
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG12625 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|3701794|3704813|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|3702794|3703813|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG12625 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 3636248..3635229 <gbrowseImage>
name=NC_012967:3635229..3636248
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|3635229|3636248|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|3635229|3636248|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 3591288..3592307 <gbrowseImage>
name=NC_012759:3591288..3592307
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|3591288|3592307|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|3591288|3592307|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3934625..3935644 <gbrowseImage>
name=AC_000091:3934625..3935644
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|3933625|3936644|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|3934625|3935644|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 3801558..3800539 <gbrowseImage>
name=NC_010473:3800539..3801558
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|3798501|3803596|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|3798501|3803596|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17635.N46a9f8946b4e3&page=17635&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="G46a9f8952dabb" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17635.G46a9f8952dabb&page=17635&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="J46a9f895770b6" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
ΔdppB (Keio:JW3512)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=108879 CGSC10598]<ref name='LIB:cgsc'/>
|

|-
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0011572 dppB::Tn5KAN-I-SceI] (FB21269)
|
Insertion at nt 731 in Plus orientation
|

|

|

|
PMID:15262929
|
[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB21269]
|
contains [[pKD46]]
|-
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0011572 dppB::Tn5KAN-I-SceI] (FB21270)
|
Insertion at nt 731 in Plus orientation
|

|

|

|
PMID:15262929
|
[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB21270]
|
does not contain [[pKD46]]
|-
|
''ΔdppB726::kan''
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:100638|CGSC:100638]]
|

|-
|
''dppB::Kan''
|

|

|
Auxotrophies
|
Abolished heme utilization.
|
PMID:16905647
|
Experimental Strain: JWN3512-2
|
See table 1.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17635.J46a9f895770b6&page=17635&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="G4e04ba0d96a9b" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.17635.G4e04ba0d96a9b&page=17635&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="I46a9f896398bd" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW3512
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCTTGCAGTTTATTCTCCGACG

Primer 2:CCtTTCTTATGACGAATACGCGG
|-
|
[[:Category:Kohara_Phage:1D1|1D1]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=603 Genobase]
|
PMID:3038334
|-
|
zhg-50::Tn10
|
Linked marker
|
CAG18450 = [http://cgsc2.biology.yale.edu/Strain.php?ID=37863 CGSC7450]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zhf-50::Tn10, zhf-5::Tn10
|-
|
zic-4901::Tn10
|
Linked marker
|
CAG18492 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38944 CGSC7457]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/>

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17635.I46a9f896398bd&page=17635&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="L46a9f896d77bf" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12625 ECOCYC:EG12625]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG12625 EcoGene:EG12625]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=948063 GeneID:948063]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17635.L46a9f896d77bf&page=17635&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="Q46a7133d957e5" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17635.Q46a7133d957e5&page=17635&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:dpp genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

tilS:Gene

2013-04-24T21:47:18Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|tilS}}{{Tab On|Gene|tilS}}{{Tab|Gene Product(s)|tilS}}{{Tab|Expression|tilS}}{{Tab|Evolution|tilS}}{{Tab|On One Page|tilS}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="Z46a9aa69a8244" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''tilS''
|-
!align=left {{table_heading_style}} |Mnemonic
||
tRNA(Ile) lysidine synthetase
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK0187, b0188, JW0183, mesJ, yaeN''<ref name='LIB:Riley_2006'/>, yaeN''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10951.Z46a9aa69a8244&page=10951&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="L46a9aa6a2cec3" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
4.58 minutes 
|
MG1655: 212331..213629 <gbrowseImage>
name=NC_000913:212331..213629
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G6096 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|211331|214629|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|212331|213629|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=G6096 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 215173..216471 <gbrowseImage>
name=NC_012967:215173..216471
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|215173|216471|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|215173|216471|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 212330..213628 <gbrowseImage>
name=NC_012759:212330..213628
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|212330|213628|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|212330|213628|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 212331..213629 <gbrowseImage>
name=AC_000091:212331..213629
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|211331|214629|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|212331|213629|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 186435..187733 <gbrowseImage>
name=NC_010473:186435..187733
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|183839|190329|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|183839|190329|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10951.L46a9aa6a2cec3&page=10951&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="O46a9aa6aca616" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10951.O46a9aa6aca616&page=10951&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="F46a9aa6b16f14" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
''mesJ''
|

|

|
Nucleoside synthesis
|
lysidine synthesis is defective in about 50% of the tRNAlle2 molecules. See figure 3B.
|
PMID:14527414
|

|
lysidine synthesis is defective in about 50% of the tRNAlle2 molecules. See figure 3B.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10951.F46a9aa6b16f14&page=10951&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="H4e04c4abe7816" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.10951.H4e04c4abe7816&page=10951&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="O46a9aa6bb4400" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW0183
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCACACTCACGCTCAATAGACA

Primer 2:CCACTAAGCGTTTTCTGCCAGAC
|-
|
[[:Category:Kohara_Phage:6F5|6F5]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=122 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:10F9|10F9]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=123 Genobase]
|
PMID:3038334
|-
|
[[yadC:Gene|zad-220::Tn10]]
|
Linked marker
|
CAG12025 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38011 CGSC7326]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 3% <ref name='LIB:Nichols_linked_Tn'/>
|-
|
[[yafC:Gene|yafC502::Tn10]]
|
Linked marker
|
CAG18436 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38989 CGSC7328]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 49% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zae-502::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10951.O46a9aa6bb4400&page=10951&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="S46a9aa6c49d29" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6096 ECOCYC:G6096]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG13220 EcoGene:EG13220]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=944889 GeneID:944889]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10951.S46a9aa6c49d29&page=10951&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="A46a677a48f011" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10951.A46a677a48f011&page=10951&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes not in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:til genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

aat:Gene

2013-04-09T23:42:07Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|aat}}{{Tab On|Gene|aat}}{{Tab|Gene Product(s)|aat}}{{Tab|Expression|aat}}{{Tab|Evolution|aat}}{{Tab|On One Page|aat}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="D46a9bae31153a" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''aat''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Amino acyl-tRNA-protein transferase
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK0876, b0885, JW0868, ycaA, G8002''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.12329.D46a9bae31153a&page=12329&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="K46a9bae38a17a" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
19.96 minutes 
|
MG1655: 926655..925951 <gbrowseImage>
name=NC_000913:925951..926655
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG11112 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|924951|927655|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|925951|926655|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG11112 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 944490..943786 <gbrowseImage>
name=NC_012967:943786..944490
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|943786|944490|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|943786|944490|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 828919..829623 <gbrowseImage>
name=NC_012759:828919..829623
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|828919|829623|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|828919|829623|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 927854..927150 <gbrowseImage>
name=AC_000091:927150..927854
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|926150|928854|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|927150|927854|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 980583..979879 <gbrowseImage>
name=NC_010473:979879..980583
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|978471|981991|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|978471|981991|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.12329.K46a9bae38a17a&page=12329&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="Y46a9bae434217" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.12329.Y46a9bae434217&page=12329&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="V46a9bae4747ed" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
Δaat (Keio:JW0868)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=107180 CGSC8899]<ref name='LIB:cgsc'/>
|

|-
|
''aat-1''
|

|

|

|
MS845 has only 50% the tryptophanase activity of parent strain.
|
PMID:137233
|
[[cgscmutation:8542|CGSC:8542]]
|

|-
|
''Δaat-784::kan''
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:99874|CGSC:99874]]
|

|-
|
''aat-1''
|

|

|
Growth Phenotype
|
When aspartate was the sole nitrogen source, the 'aat-1' mutant strain (MS845 F'128) grew about twice as fast as its parent (doubling times of 2.3 and 4.8 h, respectively).
|
PMID:137233
|
[[cgscmutation:8542|CGSC:8542]]
|

|-
|
''att-1''
|

|

|
Cell Shape
|
Abnormal Morphology appearing as clubs, spheres or ellipsoids.
|
PMID:137233
|
Parental Strain: [http://cgsc.biology.yale.edu/StrainQuery.php W4977]

Experimental Strain: [http://cgsc.biology.yale.edu/Mutation.php?ID=8542 MS845]
|
See table 1.

Normal rod-shaped morphology was restored by addition of D-alanine or D-glutamic acid to the medium

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.12329.V46a9bae4747ed&page=12329&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="V4e04b6bbe9e75" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.12329.V4e04b6bbe9e75&page=12329&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="M46a9bae51e5d9" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW0868
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCCGCCTGGTTCAGCTTTCTCG

Primer 2:CCTTCTTGTGGTGAAAACAAGCA
|-
|
[[:Category:Kohara_Phage:1H1|1H1]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=213 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:1F10|1F10]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=214 Genobase]
|
PMID:3038334
|-
|
zbh-29::Tn10
|
Linked marker
|
CAG18493 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39400 CGSC7353]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zbi-29::Tn10
|-
|
zca-1230::Tn10
|
Linked marker
|
CAG18478 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39407 CGSC7356]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 47% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zbj-1230::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.12329.M46a9bae51e5d9&page=12329&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="V46a9bae5a80f1" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11112 ECOCYC:EG11112]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG11112 EcoGene:EG11112]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=945490 GeneID:945490]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.12329.V46a9bae5a80f1&page=12329&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="W46a6d83884159" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.12329.W46a6d83884159&page=12329&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:aat genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

gyrB:Gene

2013-04-05T21:46:49Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|gyrB}}{{Tab On|Gene|gyrB}}{{Tab|Gene Product(s)|gyrB}}{{Tab|Expression|gyrB}}{{Tab|Evolution|gyrB}}{{Tab|On One Page|gyrB}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="U46a9fc9fa216f" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''gyrB''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Gyrase
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK3691, b3699, JW5625, Cou, himB, hisU, nalC, nalD, pcbA, parA, hopA, pcpA''<ref name='LIB:Riley_2006'/>, acrB, pcpA''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.U46a9fc9fa216f&page=17957&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="J46a9fca030db8" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
83.53 minutes, 83.53 minutes 
|
MG1655: 3878142..3875728 <gbrowseImage>
name=NC_000913:3875728..3878142
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10424 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|3874728|3879142|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|3875728|3878142|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10424 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 3840480..3838066 <gbrowseImage>
name=NC_012967:3838066..3840480
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|3838066|3840480|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|3838066|3840480|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 3764061..3766475 <gbrowseImage>
name=NC_012759:3764061..3766475
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|3764061|3766475|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|3764061|3766475|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3760296..3762710 <gbrowseImage>
name=AC_000091:3760296..3762710
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|3759296|3763710|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|3760296|3762710|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.J46a9fca030db8&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="U46a9fca0e9109" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
3875731
|
Edman degradation
|
PMID:3029692 
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.U46a9fca0e9109&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="K46a9fca13ef43" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
gyrBD426N
|

|
D426N
|

|
(in nal-24, nal-102, nal-103, nal- 107, nal-108, nal-111, nal-114, en-2 and en-5 mutants; resistant to nalidixic acid and to enoxacin)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES6 UniProt:P0AES6]
|-
|
gyrBK447E
|

|
K447E
|

|
(in nal-31, nal-109, nal-115 and nal-120 mutants; resistant to nalidixic acid)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES6 UniProt:P0AES6]
|-
|
gyrBW751R
|

|
W751R
|

|
(in B17 resistant mutant)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES6 UniProt:P0AES6]
|-
|
gyrBSR759RC
|

|
SR759RC
|

|
(in acriflavine susceptible mutant)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES6 UniProt:P0AES6]
|-
|
''gyrB41''(Const)
|

|

|

|

|

|
[[cgscmutation:6633|CGSC:6633]]
|

|-
|
''gyrB226''
|

|

|

|

|

|
[[cgscmutation:5052|CGSC:5052]]
|

|-
|
''gyrB225''
|

|

|

|

|

|
[[cgscmutation:7206|CGSC:7206]]
|

|-
|
''gyrB204''
|

|

|

|

|

|
[[cgscmutation:9714|CGSC:9714]]
|

|-
|
''gyrB203''(ts)
|

|

|

|
temperature sensitive
|

|
[[cgscmutation:12298|CGSC:12298]]
|

|-
|
''gyrB221''(CouR)
|

|

|

|
coumermycin resistant
|

|
[[cgscmutation:12299|CGSC:12299]]
|

|-
|
gyrB234(ts)
|

|

|
Cell Shape
|
at permissive temperature (30°C), the average cell volume is larger than the gyrB+ parent (LE234)
|
PMID:94144
|

|
Strain LE316
|-
|
''nalD'' mutation in strain AB1157-81
|

|

|
Resistant to
|
Mutant is resistant to Nalidixic acid (NAL)
|
PMID:3906038
|
Strain: AB1157-81
|
Resistance occurs at 37C but sensitive at 30C. Refer to Figure 3 in the Paper for experimental results.
|-
|
gyrB234(ts)
|

|

|
Resistant to
|
Resistant to chlorobiocin (50 ug/ml) (at permissive growth temperatures)
|
PMID:94144
|

|
Strain LE316, parental strain LE234
|-
|
gyrB234(ts)
|

|

|
Growth Phenotype
|
Temperature-sensitive growth, the plating efficiency at 42°C is less than 10-7 that of the gyrB{ parental strain LE234
|
PMID:94144
|

|
Strain LE316, parental strain is LE234
|-
|
gyrB234(ts)
|

|

|
Resistant to
|
Coumermycin A1 resistant (at permissive growth temperatures)
|
PMID:94144
|

|
Strain LE316, parental strain LE234
|-
|
Multicopy ''gyrB'' in strain RYC1010
|

|

|
Resistant to
|
Increased resistance towards coumermycin A1
|
PMID:1656457
|

|
Plasmid pCID549 was used to increase gene dosage of gyrB causing increased resistance toward coumermycin A1.
|-
|
''gyrB-225''
|
6 base pair insertion between nucloetide 1134 and 1135 of gyrB.
see figure 1.
|
2 amino acid insertion between 378 and 379 in the 43kDa N terminal region of gyr B. See fig 1.
|
Sensitivity to
|
Increase (2x) sensitivity to quinolone Ciprofloxacin Figure 2.
|
PMID:11399091
|
Experimental Strain: SD104-20

parental: SD104
|
See figure 2a/b.

Ciprofloxacin 100241

|-
|
''gyrB-225''
|
6 base pair insertion between nucloetide 1134 and 1135 of gyrB.
see figure 1.
|
2 amino acid insertion between 378 and 379 in the 43kDa N terminal region of gyr B. See fig 1.
|
Sensitivity to
|
Increase (2x) sensitivity to quinolone oxolinic acid Figure 2.
|
PMID:11399091
|
Experimental Strain: SD104-20

parental: SD104
|
See figure 2a/b.

CHEBI ID:

oxolinic acid 138856

|-
|
''gyrB-225''
|

|

|
DNA relaxation
|
Decreased DNA relaxation by 2 times.
|
PMID:11399091
|

|
See table 1.
|-
|
''gyrB-225''
|

|

|
DNA cleavage
|
DNA cleavage is reduced in mutant. Figure 5.
|
PMID:11399091
|

|
See Figure 5.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.K46a9fca13ef43&page=17957&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="S4e04bcc9ad9c2" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.17957.S4e04bcc9ad9c2&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="O46a9fca203146" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW5625
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:cloned as old JW

Primer 1:GCCTCGAATTCTTATGACTCCTC

Primer 2:CCAATATCGATATTCGCCGCTTT
|-
|
[[:Category:Kohara_Phage:3C10|3C10]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=565 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:3D1|3D1]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=566 Genobase]
|
PMID:3038334
|-
|
zid-501::Tn10
|
Linked marker
|
CAG18499 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38945 CGSC7458]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 95% <ref name='LIB:Nichols_linked_Tn'/>
|-
|
[[rbsA:Gene|rbsD296::Tn10]]
|
Linked marker
|
CAG18501 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40333 CGSC7460]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 7% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zie-296::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.O46a9fca203146&page=17957&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="H46a9fca2a22e5" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10424 ECOCYC:EG10424]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG10424 EcoGene:EG10424]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=948211 GeneID:948211]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.H46a9fca2a22e5&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="S46a716dc9e48a" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.S46a716dc9e48a&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes not in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:gyr genes]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

gyrB:Gene

2013-04-05T18:39:13Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|gyrB}}{{Tab On|Gene|gyrB}}{{Tab|Gene Product(s)|gyrB}}{{Tab|Expression|gyrB}}{{Tab|Evolution|gyrB}}{{Tab|On One Page|gyrB}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="U46a9fc9fa216f" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''gyrB''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Gyrase
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK3691, b3699, JW5625, Cou, himB, hisU, nalC, nalD, pcbA, parA, hopA, pcpA''<ref name='LIB:Riley_2006'/>, acrB, pcpA''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.U46a9fc9fa216f&page=17957&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="J46a9fca030db8" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
83.53 minutes, 83.53 minutes 
|
MG1655: 3878142..3875728 <gbrowseImage>
name=NC_000913:3875728..3878142
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10424 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|3874728|3879142|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|3875728|3878142|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10424 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 3840480..3838066 <gbrowseImage>
name=NC_012967:3838066..3840480
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|3838066|3840480|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|3838066|3840480|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 3764061..3766475 <gbrowseImage>
name=NC_012759:3764061..3766475
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|3764061|3766475|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|3764061|3766475|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3760296..3762710 <gbrowseImage>
name=AC_000091:3760296..3762710
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|3759296|3763710|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|3760296|3762710|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.J46a9fca030db8&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="U46a9fca0e9109" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
3875731
|
Edman degradation
|
PMID:3029692 
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.U46a9fca0e9109&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="K46a9fca13ef43" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
gyrBD426N
|

|
D426N
|

|
(in nal-24, nal-102, nal-103, nal- 107, nal-108, nal-111, nal-114, en-2 and en-5 mutants; resistant to nalidixic acid and to enoxacin)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES6 UniProt:P0AES6]
|-
|
gyrBK447E
|

|
K447E
|

|
(in nal-31, nal-109, nal-115 and nal-120 mutants; resistant to nalidixic acid)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES6 UniProt:P0AES6]
|-
|
gyrBW751R
|

|
W751R
|

|
(in B17 resistant mutant)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES6 UniProt:P0AES6]
|-
|
gyrBSR759RC
|

|
SR759RC
|

|
(in acriflavine susceptible mutant)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES6 UniProt:P0AES6]
|-
|
''gyrB41''(Const)
|

|

|

|

|

|
[[cgscmutation:6633|CGSC:6633]]
|

|-
|
''gyrB226''
|

|

|

|

|

|
[[cgscmutation:5052|CGSC:5052]]
|

|-
|
''gyrB225''
|

|

|

|

|

|
[[cgscmutation:7206|CGSC:7206]]
|

|-
|
''gyrB204''
|

|

|

|

|

|
[[cgscmutation:9714|CGSC:9714]]
|

|-
|
''gyrB203''(ts)
|

|

|

|
temperature sensitive
|

|
[[cgscmutation:12298|CGSC:12298]]
|

|-
|
''gyrB221''(CouR)
|

|

|

|
coumermycin resistant
|

|
[[cgscmutation:12299|CGSC:12299]]
|

|-
|
gyrB234(ts)
|

|

|
Cell Shape
|
at permissive temperature (30°C), the average cell volume is larger than the gyrB+ parent (LE234)
|
PMID:94144
|

|
Strain LE316
|-
|
''nalD'' mutation in strain AB1157-81
|

|

|
Resistant to
|
Mutant is resistant to Nalidixic acid (NAL)
|
PMID:3906038
|
Strain: AB1157-81
|
Resistance occurs at 37C but sensitive at 30C. Refer to Figure 3 in the Paper for experimental results.
|-
|
gyrB234(ts)
|

|

|
Resistant to
|
Resistant to chlorobiocin (50 ug/ml) (at permissive growth temperatures)
|
PMID:94144
|

|
Strain LE316, parental strain LE234
|-
|
gyrB234(ts)
|

|

|
Growth Phenotype
|
Temperature-sensitive growth, the plating efficiency at 42°C is less than 10-7 that of the gyrB{ parental strain LE234
|
PMID:94144
|

|
Strain LE316, parental strain is LE234
|-
|
gyrB234(ts)
|

|

|
Resistant to
|
Coumermycin A1 resistant (at permissive growth temperatures)
|
PMID:94144
|

|
Strain LE316, parental strain LE234
|-
|
Multicopy ''gyrB'' in strain RYC1010
|

|

|
Resistant to
|
Increased resistance towards coumermycin A1
|
PMID:1656457
|

|
Plasmid pCID549 was used to increase gene dosage of gyrB causing increased resistance toward coumermycin A1.
|-
|
''gyrB-225''
|
6 base pair insertion between nucloetide 1134 and 1135 of gyrB.
see figure 1.
|
2 amino acid insertion between 378 and 379 in the 43kDa N terminal region of gyr B. See fig 1.
|
Sensitivity to
|
Increase (2x) sensitivity to quinolone Ciprofloxacin Figure 2.
|
PMID:11399091
|
Experimental Strain: SD104-20

parental: SD104
|
See figure 2a/b.

Ciprofloxacin 100241

|-
|
''gyrB-225''
|
6 base pair insertion between nucloetide 1134 and 1135 of gyrB.
see figure 1.
|
2 amino acid insertion between 378 and 379 in the 43kDa N terminal region of gyr B. See fig 1.
|
Sensitivity to
|
Increase (2x) sensitivity to quinolone oxolinic acid Figure 2.
|
PMID:11399091
|
Experimental Strain: SD104-20

parental: SD104
|
See figure 2a/b.

CHEBI ID:

oxolinic acid 138856

|-
|
''gyrB-225''
|

|

|
DNA relaxation
|
Decreased DNA relaxation by 2 times.
|
PMID:11399091
|

|
See table 1.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.K46a9fca13ef43&page=17957&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="S4e04bcc9ad9c2" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.17957.S4e04bcc9ad9c2&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="O46a9fca203146" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW5625
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:cloned as old JW

Primer 1:GCCTCGAATTCTTATGACTCCTC

Primer 2:CCAATATCGATATTCGCCGCTTT
|-
|
[[:Category:Kohara_Phage:3C10|3C10]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=565 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:3D1|3D1]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=566 Genobase]
|
PMID:3038334
|-
|
zid-501::Tn10
|
Linked marker
|
CAG18499 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38945 CGSC7458]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 95% <ref name='LIB:Nichols_linked_Tn'/>
|-
|
[[rbsA:Gene|rbsD296::Tn10]]
|
Linked marker
|
CAG18501 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40333 CGSC7460]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 7% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zie-296::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.O46a9fca203146&page=17957&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="H46a9fca2a22e5" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10424 ECOCYC:EG10424]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG10424 EcoGene:EG10424]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=948211 GeneID:948211]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.H46a9fca2a22e5&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
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{| id="S46a716dc9e48a" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.S46a716dc9e48a&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes not in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:gyr genes]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

gyrB:Gene

2013-04-01T22:09:44Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|gyrB}}{{Tab On|Gene|gyrB}}{{Tab|Gene Product(s)|gyrB}}{{Tab|Expression|gyrB}}{{Tab|Evolution|gyrB}}{{Tab|On One Page|gyrB}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="U46a9fc9fa216f" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''gyrB''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Gyrase
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK3691, b3699, JW5625, Cou, himB, hisU, nalC, nalD, pcbA, parA, hopA, pcpA''<ref name='LIB:Riley_2006'/>, acrB, pcpA''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.U46a9fc9fa216f&page=17957&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="J46a9fca030db8" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
83.53 minutes, 83.53 minutes 
|
MG1655: 3878142..3875728 <gbrowseImage>
name=NC_000913:3875728..3878142
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10424 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|3874728|3879142|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|3875728|3878142|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10424 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 3840480..3838066 <gbrowseImage>
name=NC_012967:3838066..3840480
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|3838066|3840480|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|3838066|3840480|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 3764061..3766475 <gbrowseImage>
name=NC_012759:3764061..3766475
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|3764061|3766475|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|3764061|3766475|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3760296..3762710 <gbrowseImage>
name=AC_000091:3760296..3762710
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|3759296|3763710|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|3760296|3762710|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.J46a9fca030db8&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="U46a9fca0e9109" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
3875731
|
Edman degradation
|
PMID:3029692 
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.U46a9fca0e9109&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="K46a9fca13ef43" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
gyrBD426N
|

|
D426N
|

|
(in nal-24, nal-102, nal-103, nal- 107, nal-108, nal-111, nal-114, en-2 and en-5 mutants; resistant to nalidixic acid and to enoxacin)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES6 UniProt:P0AES6]
|-
|
gyrBK447E
|

|
K447E
|

|
(in nal-31, nal-109, nal-115 and nal-120 mutants; resistant to nalidixic acid)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES6 UniProt:P0AES6]
|-
|
gyrBW751R
|

|
W751R
|

|
(in B17 resistant mutant)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES6 UniProt:P0AES6]
|-
|
gyrBSR759RC
|

|
SR759RC
|

|
(in acriflavine susceptible mutant)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES6 UniProt:P0AES6]
|-
|
''gyrB41''(Const)
|

|

|

|

|

|
[[cgscmutation:6633|CGSC:6633]]
|

|-
|
''gyrB226''
|

|

|

|

|

|
[[cgscmutation:5052|CGSC:5052]]
|

|-
|
''gyrB225''
|

|

|

|

|

|
[[cgscmutation:7206|CGSC:7206]]
|

|-
|
''gyrB204''
|

|

|

|

|

|
[[cgscmutation:9714|CGSC:9714]]
|

|-
|
''gyrB203''(ts)
|

|

|

|
temperature sensitive
|

|
[[cgscmutation:12298|CGSC:12298]]
|

|-
|
''gyrB221''(CouR)
|

|

|

|
coumermycin resistant
|

|
[[cgscmutation:12299|CGSC:12299]]
|

|-
|
gyrB234(ts)
|

|

|
Cell Shape
|
at permissive temperature (30°C), the average cell volume is larger than the gyrB+ parent (LE234)
|
PMID:94144
|

|
Strain LE316
|-
|
''nalD'' mutation in strain AB1157-81
|

|

|
Resistant to
|
Mutant is resistant to Nalidixic acid (NAL)
|
PMID:3906038
|
Strain: AB1157-81
|
Resistance occurs at 37C but sensitive at 30C. Refer to Figure 3 in the Paper for experimental results.
|-
|
gyrB234(ts)
|

|

|
Resistant to
|
Resistant to chlorobiocin (50 ug/ml) (at permissive growth temperatures)
|
PMID:94144
|

|
Strain LE316, parental strain LE234
|-
|
gyrB234(ts)
|

|

|
Growth Phenotype
|
Temperature-sensitive growth, the plating efficiency at 42°C is less than 10-7 that of the gyrB{ parental strain LE234
|
PMID:94144
|

|
Strain LE316, parental strain is LE234
|-
|
gyrB234(ts)
|

|

|
Resistant to
|
Coumermycin A1 resistant (at permissive growth temperatures)
|
PMID:94144
|

|
Strain LE316, parental strain LE234
|-
|
Multicopy ''gyrB'' in strain RYC1010
|

|

|
Resistant to
|
Increased resistance towards coumermycin A1
|
PMID:1656457
|

|
Plasmid pCID549 was used to increase gene dosage of gyrB causing increased resistance toward coumermycin A1.
|-
|
''gyrB-225''
|
6 base pair insertion between nucloetide 1134 and 1135 of gyrB.
see figure 1.
|
2 amino acid insertion between 378 and 379 in the 43kDa N terminal region of gyr B. See fig 1.
|
Sensitivity to
|
Increase (2x) sensitivity to quinolone Ciprofloxacin Figure 2.
|
PMID:11399091
|
Experimental Strain: SD104-20

parental: SD104
|
See figure 2a/b.

Ciprofloxacin 100241

|-
|
''gyrB-225''
|
6 base pair insertion between nucloetide 1134 and 1135 of gyrB.
see figure 1.
|
2 amino acid insertion between 378 and 379 in the 43kDa N terminal region of gyr B. See fig 1.
|
Sensitivity to
|
Increase (2x) sensitivity to quinolone oxolinic acid Figure 2.
|
PMID:11399091
|
Experimental Strain: SD104-20

parental: SD104
|
See figure 2a/b.

CHEBI ID:

oxolinic acid 138856

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.K46a9fca13ef43&page=17957&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="S4e04bcc9ad9c2" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.17957.S4e04bcc9ad9c2&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="O46a9fca203146" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW5625
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:cloned as old JW

Primer 1:GCCTCGAATTCTTATGACTCCTC

Primer 2:CCAATATCGATATTCGCCGCTTT
|-
|
[[:Category:Kohara_Phage:3C10|3C10]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=565 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:3D1|3D1]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=566 Genobase]
|
PMID:3038334
|-
|
zid-501::Tn10
|
Linked marker
|
CAG18499 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38945 CGSC7458]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 95% <ref name='LIB:Nichols_linked_Tn'/>
|-
|
[[rbsA:Gene|rbsD296::Tn10]]
|
Linked marker
|
CAG18501 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40333 CGSC7460]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 7% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zie-296::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.O46a9fca203146&page=17957&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="H46a9fca2a22e5" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10424 ECOCYC:EG10424]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG10424 EcoGene:EG10424]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=948211 GeneID:948211]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.H46a9fca2a22e5&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="S46a716dc9e48a" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.S46a716dc9e48a&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes not in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:gyr genes]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

gyrB:Gene

2013-03-29T22:03:18Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|gyrB}}{{Tab On|Gene|gyrB}}{{Tab|Gene Product(s)|gyrB}}{{Tab|Expression|gyrB}}{{Tab|Evolution|gyrB}}{{Tab|On One Page|gyrB}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="U46a9fc9fa216f" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''gyrB''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Gyrase
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK3691, b3699, JW5625, Cou, himB, hisU, nalC, nalD, pcbA, parA, hopA, pcpA''<ref name='LIB:Riley_2006'/>, acrB, pcpA''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.U46a9fc9fa216f&page=17957&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="J46a9fca030db8" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
83.53 minutes, 83.53 minutes 
|
MG1655: 3878142..3875728 <gbrowseImage>
name=NC_000913:3875728..3878142
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10424 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|3874728|3879142|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|3875728|3878142|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10424 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 3840480..3838066 <gbrowseImage>
name=NC_012967:3838066..3840480
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|3838066|3840480|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|3838066|3840480|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 3764061..3766475 <gbrowseImage>
name=NC_012759:3764061..3766475
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|3764061|3766475|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|3764061|3766475|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3760296..3762710 <gbrowseImage>
name=AC_000091:3760296..3762710
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|3759296|3763710|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|3760296|3762710|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.J46a9fca030db8&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="U46a9fca0e9109" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
3875731
|
Edman degradation
|
PMID:3029692 
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.U46a9fca0e9109&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="K46a9fca13ef43" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
gyrBD426N
|

|
D426N
|

|
(in nal-24, nal-102, nal-103, nal- 107, nal-108, nal-111, nal-114, en-2 and en-5 mutants; resistant to nalidixic acid and to enoxacin)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES6 UniProt:P0AES6]
|-
|
gyrBK447E
|

|
K447E
|

|
(in nal-31, nal-109, nal-115 and nal-120 mutants; resistant to nalidixic acid)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES6 UniProt:P0AES6]
|-
|
gyrBW751R
|

|
W751R
|

|
(in B17 resistant mutant)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES6 UniProt:P0AES6]
|-
|
gyrBSR759RC
|

|
SR759RC
|

|
(in acriflavine susceptible mutant)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES6 UniProt:P0AES6]
|-
|
''gyrB41''(Const)
|

|

|

|

|

|
[[cgscmutation:6633|CGSC:6633]]
|

|-
|
''gyrB226''
|

|

|

|

|

|
[[cgscmutation:5052|CGSC:5052]]
|

|-
|
''gyrB225''
|

|

|

|

|

|
[[cgscmutation:7206|CGSC:7206]]
|

|-
|
''gyrB204''
|

|

|

|

|

|
[[cgscmutation:9714|CGSC:9714]]
|

|-
|
''gyrB203''(ts)
|

|

|

|
temperature sensitive
|

|
[[cgscmutation:12298|CGSC:12298]]
|

|-
|
''gyrB221''(CouR)
|

|

|

|
coumermycin resistant
|

|
[[cgscmutation:12299|CGSC:12299]]
|

|-
|
gyrB234(ts)
|

|

|
Cell Shape
|
at permissive temperature (30°C), the average cell volume is larger than the gyrB+ parent (LE234)
|
PMID:94144
|

|
Strain LE316
|-
|
''nalD'' mutation in strain AB1157-81
|

|

|
Resistant to
|
Mutant is resistant to Nalidixic acid (NAL)
|
PMID:3906038
|
Strain: AB1157-81
|
Resistance occurs at 37C but sensitive at 30C. Refer to Figure 3 in the Paper for experimental results.
|-
|
gyrB234(ts)
|

|

|
Resistant to
|
Resistant to chlorobiocin (50 ug/ml) (at permissive growth temperatures)
|
PMID:94144
|

|
Strain LE316, parental strain LE234
|-
|
gyrB234(ts)
|

|

|
Growth Phenotype
|
Temperature-sensitive growth, the plating efficiency at 42°C is less than 10-7 that of the gyrB{ parental strain LE234
|
PMID:94144
|

|
Strain LE316, parental strain is LE234
|-
|
gyrB234(ts)
|

|

|
Resistant to
|
Coumermycin A1 resistant (at permissive growth temperatures)
|
PMID:94144
|

|
Strain LE316, parental strain LE234
|-
|
Multicopy ''gyrB'' in strain RYC1010
|

|

|
Resistant to
|
Increased resistance towards coumermycin A1
|
PMID:1656457
|

|
Plasmid pCID549 was used to increase gene dosage of gyrB causing increased resistance toward coumermycin A1.
|-
|
''gyrB-225''
|
6 base pair insertion between nucloetide 1134 and 1135 of gyrB.
see figure 1.
|
2 amino acid insertion between 378 and 379 in the 43kDa N terminal region of gyr B. See fig 1.
|
Sensitivity to
|
Increase (2x) sensitivity to quinolones (Ciprofloxacin, oxolanic acid). Figure 2.
|
PMID:11399091
|
Experimental Strain: SD104-20

parental: SD104
|
See figure 2a/b.

CHEBI ID:

oxolinic acid 138856

Ciprofloxacin 100241

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.K46a9fca13ef43&page=17957&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="S4e04bcc9ad9c2" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.17957.S4e04bcc9ad9c2&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="O46a9fca203146" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW5625
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:cloned as old JW

Primer 1:GCCTCGAATTCTTATGACTCCTC

Primer 2:CCAATATCGATATTCGCCGCTTT
|-
|
[[:Category:Kohara_Phage:3C10|3C10]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=565 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:3D1|3D1]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=566 Genobase]
|
PMID:3038334
|-
|
zid-501::Tn10
|
Linked marker
|
CAG18499 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38945 CGSC7458]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 95% <ref name='LIB:Nichols_linked_Tn'/>
|-
|
[[rbsA:Gene|rbsD296::Tn10]]
|
Linked marker
|
CAG18501 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40333 CGSC7460]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 7% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zie-296::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.O46a9fca203146&page=17957&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="H46a9fca2a22e5" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10424 ECOCYC:EG10424]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG10424 EcoGene:EG10424]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=948211 GeneID:948211]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.H46a9fca2a22e5&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="S46a716dc9e48a" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.S46a716dc9e48a&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes not in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:gyr genes]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

gyrB:Gene

2013-03-28T00:00:31Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|gyrB}}{{Tab On|Gene|gyrB}}{{Tab|Gene Product(s)|gyrB}}{{Tab|Expression|gyrB}}{{Tab|Evolution|gyrB}}{{Tab|On One Page|gyrB}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="U46a9fc9fa216f" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''gyrB''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Gyrase
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK3691, b3699, JW5625, Cou, himB, hisU, nalC, nalD, pcbA, parA, hopA, pcpA''<ref name='LIB:Riley_2006'/>, acrB, pcpA''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.U46a9fc9fa216f&page=17957&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="J46a9fca030db8" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
83.53 minutes, 83.53 minutes 
|
MG1655: 3878142..3875728 <gbrowseImage>
name=NC_000913:3875728..3878142
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10424 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|3874728|3879142|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|3875728|3878142|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10424 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 3840480..3838066 <gbrowseImage>
name=NC_012967:3838066..3840480
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|3838066|3840480|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|3838066|3840480|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 3764061..3766475 <gbrowseImage>
name=NC_012759:3764061..3766475
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|3764061|3766475|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|3764061|3766475|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3760296..3762710 <gbrowseImage>
name=AC_000091:3760296..3762710
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|3759296|3763710|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|3760296|3762710|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.J46a9fca030db8&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="U46a9fca0e9109" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
3875731
|
Edman degradation
|
PMID:3029692 
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.U46a9fca0e9109&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="K46a9fca13ef43" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
gyrBD426N
|

|
D426N
|

|
(in nal-24, nal-102, nal-103, nal- 107, nal-108, nal-111, nal-114, en-2 and en-5 mutants; resistant to nalidixic acid and to enoxacin)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES6 UniProt:P0AES6]
|-
|
gyrBK447E
|

|
K447E
|

|
(in nal-31, nal-109, nal-115 and nal-120 mutants; resistant to nalidixic acid)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES6 UniProt:P0AES6]
|-
|
gyrBW751R
|

|
W751R
|

|
(in B17 resistant mutant)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES6 UniProt:P0AES6]
|-
|
gyrBSR759RC
|

|
SR759RC
|

|
(in acriflavine susceptible mutant)
|

|

|
Strain variation; seeded from [http://www.uniprot.org/uniprot/P0AES6 UniProt:P0AES6]
|-
|
''gyrB41''(Const)
|

|

|

|

|

|
[[cgscmutation:6633|CGSC:6633]]
|

|-
|
''gyrB226''
|

|

|

|

|

|
[[cgscmutation:5052|CGSC:5052]]
|

|-
|
''gyrB225''
|

|

|

|

|

|
[[cgscmutation:7206|CGSC:7206]]
|

|-
|
''gyrB204''
|

|

|

|

|

|
[[cgscmutation:9714|CGSC:9714]]
|

|-
|
''gyrB203''(ts)
|

|

|

|
temperature sensitive
|

|
[[cgscmutation:12298|CGSC:12298]]
|

|-
|
''gyrB221''(CouR)
|

|

|

|
coumermycin resistant
|

|
[[cgscmutation:12299|CGSC:12299]]
|

|-
|
gyrB234(ts)
|

|

|
Cell Shape
|
at permissive temperature (30°C), the average cell volume is larger than the gyrB+ parent (LE234)
|
PMID:94144
|

|
Strain LE316
|-
|
''nalD'' mutation in strain AB1157-81
|

|

|
Resistant to
|
Mutant is resistant to Nalidixic acid (NAL)
|
PMID:3906038
|
Strain: AB1157-81
|
Resistance occurs at 37C but sensitive at 30C. Refer to Figure 3 in the Paper for experimental results.
|-
|
gyrB234(ts)
|

|

|
Resistant to
|
Resistant to chlorobiocin (50 ug/ml) (at permissive growth temperatures)
|
PMID:94144
|

|
Strain LE316, parental strain LE234
|-
|
gyrB234(ts)
|

|

|
Growth Phenotype
|
Temperature-sensitive growth, the plating efficiency at 42°C is less than 10-7 that of the gyrB{ parental strain LE234
|
PMID:94144
|

|
Strain LE316, parental strain is LE234
|-
|
gyrB234(ts)
|

|

|
Resistant to
|
Coumermycin A1 resistant (at permissive growth temperatures)
|
PMID:94144
|

|
Strain LE316, parental strain LE234
|-
|
Multicopy ''gyrB'' in strain RYC1010
|

|

|
Resistant to
|
Increased resistance towards coumermycin A1
|
PMID:1656457
|

|
Plasmid pCID549 was used to increase gene dosage of gyrB causing increased resistance toward coumermycin A1.
|-
|
''gyrB-225''
|
6 base pair insertion between nucloetide 1134 and 1135 of gyrB.
see figure 1.
|
2 amino acid insertion between 378 and 379 in the 43kDa N terminal region of gyr B. See fig 1.
|
Sensitivity to
|
Increase (2x) sensitivity to quinolones (Ciprofloxacin, oxolanic acid). Figure 2.
|
PMID:11399091
|
Experimental Strain: SD104-20

parental: SD104
|
See figure 2a/b.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.K46a9fca13ef43&page=17957&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="S4e04bcc9ad9c2" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.17957.S4e04bcc9ad9c2&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="O46a9fca203146" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW5625
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:cloned as old JW

Primer 1:GCCTCGAATTCTTATGACTCCTC

Primer 2:CCAATATCGATATTCGCCGCTTT
|-
|
[[:Category:Kohara_Phage:3C10|3C10]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=565 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:3D1|3D1]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=566 Genobase]
|
PMID:3038334
|-
|
zid-501::Tn10
|
Linked marker
|
CAG18499 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38945 CGSC7458]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 95% <ref name='LIB:Nichols_linked_Tn'/>
|-
|
[[rbsA:Gene|rbsD296::Tn10]]
|
Linked marker
|
CAG18501 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40333 CGSC7460]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 7% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zie-296::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.O46a9fca203146&page=17957&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="H46a9fca2a22e5" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10424 ECOCYC:EG10424]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG10424 EcoGene:EG10424]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=948211 GeneID:948211]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.H46a9fca2a22e5&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="S46a716dc9e48a" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17957.S46a716dc9e48a&page=17957&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes not in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:gyr genes]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

accD:Gene

2013-03-21T19:05:23Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|accD}}{{Tab On|Gene|accD}}{{Tab|Gene Product(s)|accD}}{{Tab|Expression|accD}}{{Tab|Evolution|accD}}{{Tab|On One Page|accD}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="B46a9db32351b4" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''accD''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Acetyl-CoA carboxylase
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK2310, b2316, JW2313, dedB''<ref name='LIB:Riley_2006'/>, dedB, usg''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15195.B46a9db32351b4&page=15195&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="I46a9db32b22a3" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
[[BW2952]]
|

|
NC_012759: 2316839..2317753 <gbrowseImage>
name=NC_012759:2316839..2317753
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|2316839|2317753|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|2316839|2317753|FASTA Dump}}
|-
|
MG1655
|
52.4 minutes, 52.4 minutes 
|
MG1655: 2431948..2431034 <gbrowseImage>
name=NC_000913:2431034..2431948
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10217 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|2430034|2432948|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|2431034|2431948|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10217 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 2377518..2376604 <gbrowseImage>
name=NC_012967:2376604..2377518
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|2376604|2377518|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|2376604|2377518|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 2439372..2438458 <gbrowseImage>
name=AC_000091:2438458..2439372
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|2437458|2440372|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|2438458|2439372|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 2523713..2522799 <gbrowseImage>
name=NC_010473:2522799..2523713
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|2520971|2525541|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|2520971|2525541|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15195.I46a9db32b22a3&page=15195&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="M46a9db33691db" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15195.M46a9db33691db&page=15195&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="J46a9db33ae3cc" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
''accD6''(ts)
|

|

|
Growth Phenotype
|
temperature sensitive
|
PMID:4564200 PMID:4597230 PMID:1355086
|
[[cgscmutation:64607|CGSC:64607]]
|
at 37C normal growth can be restored
|-
|
''accD ++''
|

|

|
Overexpression
|
Increase Acetyle COA Carboxylase activity upon over expression.
|
PMID:10893421
|

|
See Table 1.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15195.J46a9db33ae3cc&page=15195&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="M4e04b6cac1f7c" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.15195.M4e04b6cac1f7c&page=15195&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="G46a9db34655a6" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW2313
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCAGCTGGATTGAACGAATTAA

Primer 2:CCGGCCTCAGGTTCCTGATCCGG
|-
|
[[:Category:Kohara_Phage:9D2|9D2]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=406 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:12F12|12F12]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=407 Genobase]
|
PMID:3038334
|-
|
[[yfbO:Gene|zfb-223::Tn10]]
|
Linked marker
|
CAG18484 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40073 CGSC7406]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 17% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zej-223::Tn10
|-
|
zfd-1::Tn10
|
Linked marker
|
CAG18467 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40075 CGSC7408]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 4% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zfb-1::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15195.G46a9db34655a6&page=15195&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="E46a9db3505ea4" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10217 ECOCYC:EG10217]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG10217 EcoGene:EG10217]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=946796 GeneID:946796]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15195.E46a9db3505ea4&page=15195&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="J46a6f8520db19" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15195.J46a6f8520db19&page=15195&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes not in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:acc genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

accC:Gene

2013-03-21T19:03:14Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|accC}}{{Tab On|Gene|accC}}{{Tab|Gene Product(s)|accC}}{{Tab|Expression|accC}}{{Tab|Evolution|accC}}{{Tab|On One Page|accC}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="L46a9f163bbc6a" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''accC''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Acetyl-CoA carboxylase
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK3243, b3256, JW3224''<ref name='LIB:Riley_2006'/>, fabG, JW3224''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17061.L46a9f163bbc6a&page=17061&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="R46a9f16447f04" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
[[BW2952]]
|

|
NC_012759: 3291087..3292436 <gbrowseImage>
name=NC_012759:3291087..3292436
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|3291087|3292436|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|3291087|3292436|FASTA Dump}}
|-
|
MG1655
|
73.37 minutes 
|
MG1655: 3403939..3405288 <gbrowseImage>
name=NC_000913:3403939..3405288
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10276 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|3402939|3406288|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|3403939|3405288|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10276 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 3333808..3335157 <gbrowseImage>
name=NC_012967:3333808..3335157
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|3333808|3335157|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|3333808|3335157|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3405772..3407121 <gbrowseImage>
name=AC_000091:3405772..3407121
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|3404772|3408121|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|3405772|3407121|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 3501684..3503033 <gbrowseImage>
name=NC_010473:3501684..3503033
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|3498986|3505731|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|3498986|3505731|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17061.R46a9f16447f04&page=17061&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="H46a9f16507fa8" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
3403939
|
Edman degradation
|
PMID:1370469 PMID:1682920 PMID:9298646 
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17061.H46a9f16507fa8&page=17061&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="M46a9f165503fd" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
accCE23R
|

|
E23R
|

|
Loss of homodimerization. No effect on ATP binding
|

|

|
seeded from [http://www.uniprot.org/uniprot/P24182 UniProt:P24182]
|-
|
accCF363A
|

|
F363A
|

|
Loss of homodimerization. No effect on ATP binding
|

|

|
seeded from [http://www.uniprot.org/uniprot/P24182 UniProt:P24182]
|-
|
accCR366E
|

|
R366E
|

|
Loss of homodimerization. No effect on ATP binding
|

|

|
seeded from [http://www.uniprot.org/uniprot/P24182 UniProt:P24182]
|-
|
accCR19E
|

|
R19E
|

|
Loss of homodimerization. No effect on ATP binding
|

|

|
seeded from [http://www.uniprot.org/uniprot/P24182 UniProt:P24182]
|-
|
''accC ++''
|

|

|
Overexpression
|
Increase Acetyle COA Carboxylase activity upon over expression.
|
PMID:10893421
|

|
See Table 1.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17061.M46a9f165503fd&page=17061&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="D4e04b6c97e697" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.17061.D4e04b6c97e697&page=17061&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="P46a9f166105d9" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW3224
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCCTGGATAAAATTGTTATTGC

Primer 2:CCTTTTTCCTGAAGACCGAGTTT
|-
|
[[:Category:Kohara_Phage:21D3|21D3]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=528 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:6G3|6G3]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=529 Genobase]
|
PMID:3038334
|-
|
[[yhcF:Gene|zhc-6::Tn10]]
|
Linked marker
|
CAG12153 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38765 CGSC7442]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 18% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zha-6::Tn10
|-
|
[[acrF:Gene|acrF3083::Tn10]]
|
Linked marker
|
CAG12075 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40247 CGSC7447]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 69% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zhd-3083::Tn10, zhe-3083::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17061.P46a9f166105d9&page=17061&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="A46a9f166ac023" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10276 ECOCYC:EG10276]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG10276 EcoGene:EG10276]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=947761 GeneID:947761]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17061.A46a9f166ac023&page=17061&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="A46a70cbe574a1" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17061.A46a70cbe574a1&page=17061&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes not in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:acc genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

accB:Gene

2013-03-20T23:31:23Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|accB}}{{Tab On|Gene|accB}}{{Tab|Gene Product(s)|accB}}{{Tab|Expression|accB}}{{Tab|Evolution|accB}}{{Tab|On One Page|accB}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="W46a9f15cc87ee" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''accB''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Acetyl-CoA carboxylase
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK3242, b3255, JW3223, fabE''<ref name='LIB:Riley_2006'/>, fabE''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17059.W46a9f15cc87ee&page=17059&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="W46a9f15d56a05" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
73.36 minutes 
|
MG1655: 3403458..3403928 <gbrowseImage>
name=NC_000913:3403458..3403928
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10275 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|3402458|3404928|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|3403458|3403928|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10275 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 3333327..3333797 <gbrowseImage>
name=NC_012967:3333327..3333797
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|3333327|3333797|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|3333327|3333797|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 3290606..3291076 <gbrowseImage>
name=NC_012759:3290606..3291076
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|3290606|3291076|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|3290606|3291076|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 3405291..3405761 <gbrowseImage>
name=AC_000091:3405291..3405761
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|3404291|3406761|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|3405291|3405761|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 3501203..3501673 <gbrowseImage>
name=NC_010473:3501203..3501673
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|3500263|3502613|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|3500263|3502613|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17059.W46a9f15d56a05&page=17059&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="R46a9f15e168fc" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
3403458
|
Edman degradation
|
PMID:1370469 PMID:9740056 
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17059.R46a9f15e168fc&page=17059&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="H46a9f15e5f2b1" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
''accB22''(ts)
|

|

|

|
temperature sensitive
|

|
[[cgscmutation:9109|CGSC:9109]]
|

|-
|
''accB ++''
|

|

|
Overexpression
|
Increase Acetyle COA Carboxylase activity upon over expression.
|
PMID:10893421
|
See Table 1.
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17059.H46a9f15e5f2b1&page=17059&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="U4e04b6c61122f" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.17059.U4e04b6c61122f&page=17059&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="G46a9f15f1f025" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW3223
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCGATATTCGTAAGATTAAAAA

Primer 2:CCtTCGATGACGACCAGCGGCTC
|-
|
[[:Category:Kohara_Phage:21D3|21D3]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=528 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:6G3|6G3]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=529 Genobase]
|
PMID:3038334
|-
|
[[yhcF:Gene|zhc-6::Tn10]]
|
Linked marker
|
CAG12153 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38765 CGSC7442]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 19% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zha-6::Tn10
|-
|
[[acrF:Gene|acrF3083::Tn10]]
|
Linked marker
|
CAG12075 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40247 CGSC7447]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 68% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zhd-3083::Tn10, zhe-3083::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17059.G46a9f15f1f025&page=17059&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="G46a9f15fbad04" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10275 ECOCYC:EG10275]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG10275 EcoGene:EG10275]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=947758 GeneID:947758]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17059.G46a9f15fbad04&page=17059&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="F46a70cb7e0f6c" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.17059.F46a70cb7e0f6c&page=17059&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes not in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:acc genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

accA:Gene

2013-03-20T22:52:13Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|accA}}{{Tab On|Gene|accA}}{{Tab|Gene Product(s)|accA}}{{Tab|Expression|accA}}{{Tab|Evolution|accA}}{{Tab|On One Page|accA}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="Z46a9aa589d36a" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''accA''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Acetyl-CoA carboxylase
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK0184, b0185, JW0180''<ref name='LIB:Riley_2006'/>, JW0180''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10945.Z46a9aa589d36a&page=10945&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="J46a9aa5921f1b" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
4.5 minutes 
|
MG1655: 208621..209580 <gbrowseImage>
name=NC_000913:208621..209580
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG11647 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|207621|210580|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|208621|209580|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG11647 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 211463..212422 <gbrowseImage>
name=NC_012967:211463..212422
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|211463|212422|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|211463|212422|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 208620..209579 <gbrowseImage>
name=NC_012759:208620..209579
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|208620|209579|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|208620|209579|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 208621..209580 <gbrowseImage>
name=AC_000091:208621..209580
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|207621|210580|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|208621|209580|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 182725..183684 <gbrowseImage>
name=NC_010473:182725..183684
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|180807|185602|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|180807|185602|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10945.J46a9aa5921f1b&page=10945&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="Q46a9aa59bf559" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
208624
|
Edman degradation
|
PMID:1355089 PMID:9298646 
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10945.Q46a9aa59bf559&page=10945&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="U46a9aa5a0bc1a" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
''accA ++''
|

|

|
Overexpression
|
Increase Acetyle COA Carboxylase activity upon over expression.
|
PMID:10893421
|

|
See Table 1.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10945.U46a9aa5a0bc1a&page=10945&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="A4e04b6c4ae80c" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.10945.A4e04b6c4ae80c&page=10945&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| id="Z46a9aa5aa92b5" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW0180
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:GCCAGTCTGAATTTCCTTGATTT

Primer 2:CCCGCGTAACCGTAGCTCATCAG
|-
|
[[:Category:Kohara_Phage:E2B8|E2B8]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=121 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:6F5|6F5]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=122 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:10F9|10F9]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=123 Genobase]
|
PMID:3038334
|-
|
[[yadC:Gene|zad-220::Tn10]]
|
Linked marker
|
CAG12025 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38011 CGSC7326]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 4% <ref name='LIB:Nichols_linked_Tn'/>
|-
|
[[yafC:Gene|yafC502::Tn10]]
|
Linked marker
|
CAG18436 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38989 CGSC7328]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 42% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zae-502::Tn10

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10945.Z46a9aa5aa92b5&page=10945&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="O46a9aa5b3eb2d" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11647 ECOCYC:EG11647]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG11647 EcoGene:EG11647]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=944895 GeneID:944895]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10945.O46a9aa5b3eb2d&page=10945&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="H46a677943e1d5" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10945.H46a677943e1d5&page=10945&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes not in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:acc genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

copA:Gene

2013-03-04T19:28:25Z

Joncrz: Table edited by Joncrz via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|copA}}{{Tab On|Gene|copA}}{{Tab|Gene Product(s)|copA}}{{Tab|Expression|copA}}{{Tab|Evolution|copA}}{{Tab|On One Page|copA}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
{{BacktoTop}}

{{Gene_nomenclature_help}}
{| id="F46a9b1cc9cb14" class=" tableEdit Gene_nomenclature_table"

|-
!align=left {{table_heading_style}} |Standard name
||
''copA''
|-
!align=left {{table_heading_style}} |Mnemonic
||
Copper
|-
!align=left {{table_heading_style}} |Synonyms
||
''ECK0478, b0484, JW0473, ybaR''<ref name='LIB:Riley_2006'/>, ybaR''

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11533.F46a9b1cc9cb14&page=11533&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table] ||
|}


</protect>
===Notes===

==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>

{{Gene_location_help}}
{| id="R46a9b1cd20c43" class=" tableEdit Gene_location_table"
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
MG1655
|
10.95 minutes 
|
MG1655: 510603..508099 <gbrowseImage>
name=NC_000913:508099..510603
source=MG1655
preset=GeneLocation
</gbrowseImage>

|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G6260 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|507099|511603|GBrowse(MG1655)}}

|
{{GBrowseFastaLink|MG1655|NC_000913|508099|510603|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=G6260 EcoCyc Sequence Dump]
|-
|
[[REL606]]
|

|
NC_012967: 483547..481043 <gbrowseImage>
name=NC_012967:481043..483547
source=REL606
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|REL606|NC_012967|481043|483547|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|481043|483547|FASTA Dump}}
|-
|
[[BW2952]]
|

|
NC_012759: 410858..413362 <gbrowseImage>
name=NC_012759:410858..413362
source=BW2952
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|BW2952|NC_012759|410858|413362|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|410858|413362|FASTA Dump}}
|-
|
W3110
|
 
|
W3110: 510603..508099 <gbrowseImage>
name=AC_000091:508099..510603
source=W3110
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|W3110|AC_000091|507099|511603|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|AC_000091|508099|510603|FASTA Dump}}
|-
|
[[DH10B]]
|

|
DH10B: 449934..447430 <gbrowseImage>
name=NC_010473:447430..449934
source=DH10B
preset=GeneLocation
</gbrowseImage>

|
{{GBrowseLink|DH10B|NC_010473|442422|454942|GBrowse(DH10B)}}
|
{{GBrowseFastaLink|DH10B|NC_010473|442422|454942|FASTA Dump}}

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11533.R46a9b1cd20c43&page=11533&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|}


</protect>
===Notes===

==Sequence Features==
{{BacktoTop}}

{{Gene_sequence_features_help}}
{| id="M46a9b1cdbcce1" class=" tableEdit Gene_sequence_features_table"
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
508102
|
Edman degradation
|
PMID:9868784 
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11533.M46a9b1cdbcce1&page=11533&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table] || || || || ||
|}


<protect></protect>
====Notes====

==Alleles and Phenotypes==
{{BacktoTop}}

{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="N46a9b1ce088f7" class=" tableEdit Gene_allele_table dataTable"
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|
copAC113A
|

|
C113A
|

|
No effect
|

|

|
seeded from [http://www.uniprot.org/uniprot/Q59385 UniProt:Q59385]
|-
|
copAC479A
|

|
C479A
|

|
Loss of copper resistance, transport and phosphoenzyme formation
|

|

|
seeded from [http://www.uniprot.org/uniprot/Q59385 UniProt:Q59385]
|-
|
copAC481A,H
|

|
C481A,H
|

|
Loss of copper resistance, transport and phosphoenzyme formation
|

|

|
seeded from [http://www.uniprot.org/uniprot/Q59385 UniProt:Q59385]
|-
|
copAC110A
|

|
C110A
|

|
No effect
|

|

|
seeded from [http://www.uniprot.org/uniprot/Q59385 UniProt:Q59385]
|-
|
copA
|

|

|

|

|

|

|
Deletion
|-
|
copAC14A
|

|
C14A
|

|
No effect
|

|

|
seeded from [http://www.uniprot.org/uniprot/Q59385 UniProt:Q59385]
|-
|
copAC17A
|

|
C17A
|

|
No effect
|

|

|
seeded from [http://www.uniprot.org/uniprot/Q59385 UniProt:Q59385]
|-
|
ΔcopA (Keio:JW0473)
|
deletion
|
deletion
|

|

|
PMID:16738554
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] [http://cgsc2.biology.yale.edu/Strain.php?ID=106906 CGSC8625]<ref name='LIB:cgsc'/>
|

|-
|
''ΔcopA1::kan''
|

|

|

|

|

|
[[cgscmutation:77264|CGSC:77264]]
|

|-
|
''ΔcopA767::kan''
|

|

|

|

|
PMID:16738554
|
[[cgscmutation:100374|CGSC:100374]]
|

|-
|
''copA(del)''
|

|

|
Sensitivity to
|
Sensitivity to antimicrobial agent Copper Ion.
|
PMID:10639134
|
Experimental Strain: LMG194
|
See growth curve in figure 2.

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11533.N46a9b1ce088f7&page=11533&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table] || || || || || || ||
|}


<protect></protect>
===Notes===

==Genetic Interactions==
{{BacktoTop}}
<protect>
{{Genetic_interaction_help}}
{| id="I4e04b8f095a5f" class=" tableEdit Genetic_interaction_table dataTable"
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.11533.I4e04b8f095a5f&page=11533&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table] || || || || || ||
|}
</protect>


===Notes===

==Genetic Resources==
{{BacktoTop}}

{{Gene_resources_help}}
{| {{Prettytable}} id="E46a9b1cea484a" class=" tableEdit Gene_resource_table"
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
|-
|
JW0473
|
Plasmid clone
|
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
PMID:16769691

Status:Clone OK

Primer 1:gccTCACAAACTATCGACCTGACCCTGGAC

Primer 2:ccTTCCTTCGGTTTAAACCGCAGCAACCGG
|-
|
[[:Category:Kohara_Phage:4B10|4B10]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=153 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:7C12|7C12]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=154 Genobase]
|
PMID:3038334
|-
|
[[gsk:Gene|gsk-3055::Tn10]]
|
Linked marker
|
CAG12154 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39379 CGSC7341]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 79% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:zbb-30-55::TnlO, zba-3055::Tn10
|-
|
[[purK:Gene|purK79::Tn10]]
|
Linked marker
|
CAG12171 = [http://cgsc2.biology.yale.edu/Strain.php?ID=39380 CGSC7342]<ref name='LIB:cgsc'/>
|
est. P1 cotransduction: 15% <ref name='LIB:Nichols_linked_Tn'/> 
Synonyms:purE79::Tn10
|-
|
copA::kan
|
Strain
|
CN2328
|
PMID: 11167016
|-
|
pCN2345
|
Plasmid Clone
|
copA with own promoter cloned into pBR322
|
PMID: 11167016

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11533.E46a9b1cea484a&page=11533&pagename={{FULLPAGENAMEE}}&type=&template=Gene_resource_table edit table] || || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="O46a9b1cf393ac" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6260 ECOCYC:G6260]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG13246 EcoGene:EG13246]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=946106 GeneID:946106]
|
Escherichia coli str. K-12 substr. MG1655

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11533.O46a9b1cf393ac&page=11533&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="Q46a6cf5c1d6c1" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11533.Q46a6cf5c1d6c1&page=11533&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude><protect>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:cop genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

scpC:Gene

2013-02-11T22:56:28Z

Joncrz: Table edited by Joncrz via TableEdit

Help:Editing Tables

2013-02-11T19:52:41Z

Joncrz:

You can find help on editing phenotypes on the help page,[[Help:Gene alleles]].

Help:Editing Tables

2013-02-11T19:52:28Z

Joncrz:

You can find help on editing phenotypes on the help page,[[Help:Gene alleles here]].

Help:Editing Tables

2013-02-11T19:51:38Z

Joncrz:

You can find help on editing phenotypes table [[Help:Gene alleles]]

Help:Editing Tables

2013-02-11T19:51:25Z

Joncrz:

You can find help on editing phenotypes table [[[Help:Gene alleles]]