EcoliWiki - User contributions [en]

Pyrimidine Biosynthesis

2008-12-16T01:57:17Z

Jhandle1:

[[Image:Slide04.jpg|500px]]

De novo biosynthesis of pyrimidine ribonucleotides

[[Image:DH69002.gif|700px]]

Salvage of pyrimidine ribonucleotides

[[Image:DH69139.gif|1200px]]

Regulation

ATCase is allosterically stimulated by ATP and inhibited by CTP(2).

==References==
<ref name=LIB:EcoCyc10.6/>
<ref name=Voet>Voet, D., Voet, J.G. 1995. Biochemistry, 2nd ed. John Wiley & Sons, Inc. New York.</ref>
<references/>

__NOTOC__

Pyrimidine Biosynthesis

2008-12-16T01:46:55Z

Jhandle1:

File:DH69139.gif

2008-12-16T01:43:57Z

Jhandle1:

Pyrimidine Biosynthesis

2008-12-16T01:41:27Z

Jhandle1:

[[Image:Slide04.jpg|500px]]

De novo biosynthesis of pyrimidine ribonucleotides

[[Image:DH69002.gif|700px]]

==References==
{{RefHelp}}
<references/>

__NOTOC__

File:DH69002.gif

2008-12-16T01:34:09Z

Jhandle1: Pyrimidine Biosynthesis enzymatic reactions from EcoCyc

Pyrimidine Biosynthesis enzymatic reactions from EcoCyc

Pyrimidine Biosynthesis

2008-12-16T01:31:12Z

Jhandle1:

[[Image:Slide04.jpg|500px]]

==References==
{{RefHelp}}
<references/>

__NOTOC__

Pyrimidine Biosynthesis

2008-12-16T01:25:13Z

Jhandle1:

<gallery>
Image:Slide04.jpg|center|200px|
</gallery>

==References==
{{RefHelp}}
<references/>

__NOTOC__

Pyrimidine Biosynthesis

2008-12-16T01:22:49Z

Jhandle1:

<gallery>
Image:Slide04.jpg|Caption1
</gallery>

==References==
{{RefHelp}}
<references/>

__NOTOC__

File:Slide04.jpg

2008-12-16T01:21:29Z

Jhandle1: overview of pyrimidine biosynthesis

overview of pyrimidine biosynthesis

Pyrimidine Biosynthesis

2008-12-16T01:15:19Z

Jhandle1: New Template:Empty_Page Page

==References==
{{RefHelp}}
<references/>

__NOTOC__

uspC:Quickview

2008-09-18T19:16:18Z

Jhandle1: Table edited by Jhandle1 via TableEdit

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!align=left {{table_heading_style}} |Gene Name
||
[[uspC:Gene|''uspC]]'' (synonyms: ''yecG, ECK1894, b1895, JW1884'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
|-
!align=left {{table_heading_style}} |Product(s)
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[[uspC:Gene_Product(s)|YecG product]]<ref name='LIB:Riley_2006'/>: universal stress protein product, B1895 product, UspC product
|-
!align=left {{table_heading_style}} |Description
||
universal stress protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>

|-
!align=left {{table_heading_style}} |Knock-Out Phenotype
||
UspC null mutants lack flagella and are thus completely nonmotile (Nachin et al, 2005; [[PMID:16159758]]<ref name=PMID:16159758/>). UspC null mutants also are sensitive to UV irradiation (Gustavsson et al, 2002; [[PMID:11849540]]<ref name=PMID:11849540/>)
|-
!align=left {{table_heading_style}} |Regulation/Expression
||
transcription unit(s): [[:Category:Txn_unit:uspC|uspC]]<ref name='LIB:EcoCyc10.6'/>
|-
!align=left {{table_heading_style}} |Regulation/Activity
||
Upregulated in response to a variety of stressors in a ppGpp dependent manner (Gustavsson et al, 2002; [[PMID:11849540]]<ref name=PMID:11849540/>).

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===Notes===
{{BacktoTop}}

<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references/>
<ref>'''Gustavsson, N., Diez, A.A., Nystrom, T.''' 2002. The universal stress protein paralogues of ''Escherichia coli'' are co-ordinately regulated and co-operate in the defence against DNA damage. ''Mol. Microbiol.'' '''43''':107-111</ref>

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uspC:Quickview

2008-09-18T19:14:34Z

Jhandle1: Table edited by Jhandle1 via TableEdit

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[[uspC:Gene|''uspC]]'' (synonyms: ''yecG, ECK1894, b1895, JW1884'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
|-
!align=left {{table_heading_style}} |Product(s)
||
[[uspC:Gene_Product(s)|YecG product]]<ref name='LIB:Riley_2006'/>: universal stress protein product, B1895 product, UspC product
|-
!align=left {{table_heading_style}} |Description
||
universal stress protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>

|-
!align=left {{table_heading_style}} |Knock-Out Phenotype
||
UspC null mutants lack flagella and are thus completely nonmotile (Nachin et al, 2005; [[PMID:16159758]]<ref name=PMID:16159758/>). UspC null mutants also are sensitive to UV irradiation (Gustavsson et al, 2002; [[PMID:11849540]]<ref name=PMID:11849540/>)
|-
!align=left {{table_heading_style}} |Regulation/Expression
||
transcription unit(s): [[:Category:Txn_unit:uspC|uspC]]<ref name='LIB:EcoCyc10.6'/>
|-
!align=left {{table_heading_style}} |Regulation/Activity
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{{Quickview_table_help}}
<protect></protect>
===Notes===
{{BacktoTop}}

<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references/>
<ref>'''Gustavsson, N., Diez, A.A., Nystrom, T.''' 2002. The universal stress protein paralogues of ''Escherichia coli'' are co-ordinately regulated and co-operate in the defence against DNA damage. ''Mol. Microbiol.'' '''43''':107-111</ref>

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uspC:Quickview

2008-09-18T19:12:21Z

Jhandle1: Table edited by Jhandle1 via TableEdit

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|-
!align=left {{table_heading_style}} |Gene Name
||
[[uspC:Gene|''uspC]]'' (synonyms: ''yecG, ECK1894, b1895, JW1884'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
|-
!align=left {{table_heading_style}} |Product(s)
||
[[uspC:Gene_Product(s)|YecG product]]<ref name='LIB:Riley_2006'/>: universal stress protein product, B1895 product, UspC product
|-
!align=left {{table_heading_style}} |Description
||
universal stress protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>

|-
!align=left {{table_heading_style}} |Knock-Out Phenotype
||
UspC null mutants lack flagella and are thus completely nonmotile (Nachin et al, 2005). UspC null mutants also are sensitive to UV irradiation (Gustavsson et al, 2002). [[PMID:11849540]]<ref name=PMID:11849540/>
|-
!align=left {{table_heading_style}} |Regulation/Expression
||
transcription unit(s): [[:Category:Txn_unit:uspC|uspC]]<ref name='LIB:EcoCyc10.6'/>
|-
!align=left {{table_heading_style}} |Regulation/Activity
||

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{{Quickview_table_help}}
<protect></protect>
===Notes===
{{BacktoTop}}

<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references/>
<ref>'''Gustavsson, N., Diez, A.A., Nystrom, T.''' 2002. The universal stress protein paralogues of ''Escherichia coli'' are co-ordinately regulated and co-operate in the defence against DNA damage. ''Mol. Microbiol.'' '''43''':107-111</ref>

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uspC:Quickview

2008-09-18T19:11:53Z

Jhandle1: Table edited by Jhandle1 via TableEdit

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{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"

|-
!align=left {{table_heading_style}} |Gene Name
||
[[uspC:Gene|''uspC]]'' (synonyms: ''yecG, ECK1894, b1895, JW1884'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
|-
!align=left {{table_heading_style}} |Product(s)
||
[[uspC:Gene_Product(s)|YecG product]]<ref name='LIB:Riley_2006'/>: universal stress protein product, B1895 product, UspC product
|-
!align=left {{table_heading_style}} |Description
||
universal stress protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>

|-
!align=left {{table_heading_style}} |Knock-Out Phenotype
||
UspC null mutants lack flagella and are thus completely nonmotile (Nachin et al, 2005). UspC null mutants also are sensitive to UV irradiation (Gustavsson et al, 2002).PMID:11849540
|-
!align=left {{table_heading_style}} |Regulation/Expression
||
transcription unit(s): [[:Category:Txn_unit:uspC|uspC]]<ref name='LIB:EcoCyc10.6'/>
|-
!align=left {{table_heading_style}} |Regulation/Activity
||

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|}

{{Quickview_table_help}}
<protect></protect>
===Notes===
{{BacktoTop}}

<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references/>
<ref>'''Gustavsson, N., Diez, A.A., Nystrom, T.''' 2002. The universal stress protein paralogues of ''Escherichia coli'' are co-ordinately regulated and co-operate in the defence against DNA damage. ''Mol. Microbiol.'' '''43''':107-111</ref>

</noinclude>

uspC:Quickview

2008-09-18T19:02:47Z

Jhandle1: /* References */

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!align=left {{table_heading_style}} |Gene Name
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[[uspC:Gene|''uspC]]'' (synonyms: ''yecG, ECK1894, b1895, JW1884'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
|-
!align=left {{table_heading_style}} |Product(s)
||
[[uspC:Gene_Product(s)|YecG product]]<ref name='LIB:Riley_2006'/>: universal stress protein product, B1895 product, UspC product
|-
!align=left {{table_heading_style}} |Description
||
universal stress protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>

|-
!align=left {{table_heading_style}} |Knock-Out Phenotype
||
UspC null mutants lack flagella and are thus completely nonmotile (Nachin et al, 2005). UspC null mutants also are sensitive to UV irradiation (Gustavsson et al, 2002).
|-
!align=left {{table_heading_style}} |Regulation/Expression
||
transcription unit(s): [[:Category:Txn_unit:uspC|uspC]]<ref name='LIB:EcoCyc10.6'/>
|-
!align=left {{table_heading_style}} |Regulation/Activity
||

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{{Quickview_table_help}}
<protect></protect>
===Notes===
{{BacktoTop}}

<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references/>
<ref>'''Gustavsson, N., Diez, A.A., Nystrom, T.''' 2002. The universal stress protein paralogues of ''Escherichia coli'' are co-ordinately regulated and co-operate in the defence against DNA damage. ''Mol. Microbiol.'' '''43''':107-111</ref>

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uspC:Quickview

2008-09-18T18:58:49Z

Jhandle1: Table edited by Jhandle1 via TableEdit

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|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
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{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"

|-
!align=left {{table_heading_style}} |Gene Name
||
[[uspC:Gene|''uspC]]'' (synonyms: ''yecG, ECK1894, b1895, JW1884'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
|-
!align=left {{table_heading_style}} |Product(s)
||
[[uspC:Gene_Product(s)|YecG product]]<ref name='LIB:Riley_2006'/>: universal stress protein product, B1895 product, UspC product
|-
!align=left {{table_heading_style}} |Description
||
universal stress protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>

|-
!align=left {{table_heading_style}} |Knock-Out Phenotype
||
UspC null mutants lack flagella and are thus completely nonmotile (Nachin et al, 2005). UspC null mutants also are sensitive to UV irradiation (Gustavsson et al, 2002).
|-
!align=left {{table_heading_style}} |Regulation/Expression
||
transcription unit(s): [[:Category:Txn_unit:uspC|uspC]]<ref name='LIB:EcoCyc10.6'/>
|-
!align=left {{table_heading_style}} |Regulation/Activity
||

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===Notes===
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<noinclude>
==References==
{{BacktoTop}}
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</noinclude>

uspC:Quickview

2008-09-18T18:52:49Z

Jhandle1: Table edited by Jhandle1 via TableEdit

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{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"

|-
!align=left {{table_heading_style}} |Gene Name
||
[[uspC:Gene|''uspC]]'' (synonyms: ''yecG, ECK1894, b1895, JW1884'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
|-
!align=left {{table_heading_style}} |Product(s)
||
[[uspC:Gene_Product(s)|YecG product]]<ref name='LIB:Riley_2006'/>: universal stress protein product, B1895 product, UspC product
|-
!align=left {{table_heading_style}} |Description
||
universal stress protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>

|-
!align=left {{table_heading_style}} |Knock-Out Phenotype
||
UspC null mutants lack flagella and are thus completely nonmotile. UspC null mutants also are sensitive to UV irradiation and lag when coming out of stationary phase.
|-
!align=left {{table_heading_style}} |Regulation/Expression
||
transcription unit(s): [[:Category:Txn_unit:uspC|uspC]]<ref name='LIB:EcoCyc10.6'/>
|-
!align=left {{table_heading_style}} |Regulation/Activity
||

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===Notes===
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<noinclude>
==References==
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<references/>
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User:Jhandle1

2008-09-18T18:49:33Z

Jhandle1: New page: Jesse Handler Student Department of Chemistry and Biochemistry Swarthmore College Swarthmore, PA

Jesse Handler

Student
Department of Chemistry and Biochemistry
Swarthmore College
Swarthmore, PA