PMID:7038393

2007-11-07T21:52:25Z

Hmintche: New PMID: Page!

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<span style = 'font-size: large'> '''Froehlich, B''' (1981) Weigle reactivation of the single-stranded DNA phage f1.''Mol. Gen. Genet.'' '''184''':416-20</span>

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|{{TableHeadingColor}} |'''Abstract''' || The survival of ultraviolet light (UV) damaged single-stranded DNA bacteriophage f1 is increased when the Escherichia coli host is irradiated with UV prior to infection. This repair, called Weigle reactivation, is multiplicity independent and is absent in recA and in lexA mutants. The function of the recA-lexA repair system needed is repair and not recombination, as demonstrated by the absence of Weigle reactivation in mutants that are recombination proficient but defective in repair of double-stranded DNA. Weigle reactivation of f1 requires high levels of the recA protein, and in addition activation of recA or another protein. This activation can be produced by UV irradiation, or by the tif-1 allele of recA together with the spr allele of lexA. Mutagenesis of f1 has the same requirements as W-reactivation, and in addition requires UV irradiation of the phage.
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|{{TableHeadingColor}} nowrap |'''Links''' || [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7038393 PubMed]
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==Significance {{HelpIcon|Help:Literature}} ==
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== Useful Materials and Methods {{HelpIcon|Help:Literature}}==
{{LitMaterials}}

==Annotations {{HelpIcon|Help:Literature}}==
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{|class = 'sortable' {{Prettytable}} id='221858'
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!Gene product!!Qualifier!!GO ID!!GO term name!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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==EcoliWiki Links {{HelpIcon|Help:Literature}} ==
{{LitLinks}}

==References==
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<references/>

lexA:Gene

2007-11-07T21:52:07Z

Hmintche: edited by Hmintche via TableEdit

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{{Tab|Quickview|lexA}}{{Tab On|Gene|lexA}}{{Tab|Gene Product(s)|lexA}}{{Tab|Expression|lexA}}{{Tab|Evolution|lexA}}{{Tab|On One Page|lexA}}{{TabsBottom}}
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|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
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==Nomenclature==
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{|{{Prettytable}}
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!{{table_heading_style}} |Standard name
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''lexA''
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!{{table_heading_style}} |Mnemonic
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!{{table_heading_style}} |Synonyms
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''ECK4035, b4043, JW4003, exrA, tsl, umuA''<ref name='LIB:Riley_2006'/>
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===Notes===

==Location(s) and DNA Sequence==
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{|class = 'sortable' {{Prettytable}} id='149146'
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!Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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MG1655
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91.71 minutes 
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MG1655: 4255138..4255746<br />{{GBrowseFigureByCoord|4254138|4256746|ecoli|MG1655}}
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*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10533 EcoCyc]
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli/?q=MG1655:4254138..4256746 GBrowse(MG1655)]

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*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli/?plugin=FastaDumper&name=MG1655:4255138..4255746&plugin_action=Go FASTA Dump]
*[http://biocyc.org/ECOLI/sequence?object=EG10533 EcoCyc Sequence Dump]
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W3110
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W3110: 4260705..4261313<br />{{GBrowseFigureByCoord|4259705|4262313|ecoli_W3110|W3110}}
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*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?q=W3110:4259705..4262313 GBrowse(W3110)]
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*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?plugin=FastaDumper&name=W3110:4260705..4261313&plugin_action=Go FASTA Dump]
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===Notes===

==Sequence Features==
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{|class = 'sortable' {{Prettytable}} id='149147'
|- {{table_heading_style}}
!Feature type!!Location!!Description
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====Notes====

==Alleles and Phenotypes==
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{|class = 'sortable' {{Prettytable}} id='149148'
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!Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
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spr
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[[PMID:2834329]]<ref name=PMID:2834329/>
[[PMID:7038393]]<ref name=PMID:7038393/>
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uninducible, not cleaved during SOS response
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===Notes===

==Genetic Resources==
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{|class = 'sortable' {{Prettytable}} id='149149'
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!Resource!!Resource Type!!Source!!Notes/Reference
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JW4003
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Plasmid clone
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[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
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[[PMID:16769691]]<ref name=PMID:16769691/>

Status:Clone OK

Primer 1:GCCAAAGCGTTAACGGCCAGGCA

Primer 2:CCaAGCCAGTCGCCGTTGCGAAT
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[[malF:Gene|malF3089::Tn10]]
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Linked marker
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CAG12164 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40371 CGSC7476]<ref name='LIB:cgsc'/>
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est. P1 cotransduction: 60% <ref name='LIB:Nichols_linked_Tn'/>
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[[yjcS:Gene|zje-2241::Tn10]]
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Linked marker
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CAG18427 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40603 CGSC7481]<ref name='LIB:cgsc'/>
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est. P1 cotransduction: 9% <ref name='LIB:Nichols_linked_Tn'/>
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===Notes===

==Accessions in Other Databases==
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{|class = 'sortable' {{Prettytable}} id='149150'
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!Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10533 EcoCyc:EG10533]
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[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
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[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB0528 EchoBASE:EB0528]
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[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
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[http://chase.ou.edu/macro/searchlink.php?bnum=b4043 EcoliGenExpDB:b4043]
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[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])
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[http://BioCyc.org/ECOL199310/new-image?object=C5014 ECOL199310CYC:C5014]
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[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
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[http://ecogene.org/geneinfo.php?eg_id=EG10533 EcoGene:EG10533]
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[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
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[http://BioCyc.org/ECOO157/new-image?object=LEXA ECOO157CYC:LEXA]
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[http://cgsc.biology.yale.edu CGSC] ([[CGSC|EcoliWiki Page]])
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[http://cgsc.biology.yale.edu/cgi-bin/sybgw/cgsc/Site/558 CGSC:558]
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{{Gene_accessions_help}}
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===Notes===

==Links==
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!Name!!URL!!Comments
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==References==
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{{RefHelp}}
<references/>
__NOTOC__
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===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes not in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]

EcoliWiki - User contributions [en]

PMID:7038393

lexA:Gene