Talk:parC:Evolution

2007-08-22T16:31:25Z

Handrews: Colibase

{{Evolution talk placeholder}}

== Colibase ==

We should use this for evolution source for ''entero.''

crl:Gene

2007-08-22T16:13:07Z

Handrews: edited by Handrews via TableEdit

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{{Tab|Quickview|crl}}{{Tab On|Gene|crl}}{{Tab|Gene Product(s)|crl}}{{Tab|Expression|crl}}{{Tab|Evolution|crl}}{{Tab|On One Page|crl}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
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==Nomenclature==
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{|{{Prettytable}}
|-
!{{table_heading_style}} |Standard name
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''crl''
|-
!{{table_heading_style}} |Mnemonic
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|-
!{{table_heading_style}} |Synonyms
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''ECK0241, b0240, JW0230''<ref name='LIB:Riley_2006'/>
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|colspan='2'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.11059.C46a9ab8c16325&page=11059&pagename={{FULLPAGENAMEE}} edit table]
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{{Gene_nomenclature_help}}
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===Notes===

==Location(s) and DNA Sequence==
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{|class = 'sortable' {{Prettytable}} id='126375'
|- {{table_heading_style}}
!Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
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MG1655
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5.56 minutes 
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MG1655: 257829..258230<br />{{GBrowseFigureByCoord|256829|259230|ecoli|MG1655}}
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*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG11092 EcoCyc]
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli/?q=MG1655:256829..259230 GBrowse(MG1655)]

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*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli/?plugin=FastaDumper&name=MG1655:257829..258230&plugin_action=Go FASTA Dump]
*[http://biocyc.org/ECOLI/sequence?object=EG11092 EcoCyc Sequence Dump]
|-
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W3110
|
 
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W3110: 257829..258230<br />{{GBrowseFigureByCoord|256829|259230|ecoli_W3110|W3110}}
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*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?q=W3110:256829..259230 GBrowse(W3110)]
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*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?plugin=FastaDumper&name=W3110:257829..258230&plugin_action=Go FASTA Dump]
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===Notes===

==Sequence Features==
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|- {{table_heading_style}}
!Feature type!!Location!!Description
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====Notes====

==Alleles and Phenotypes==
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{|class = 'sortable' {{Prettytable}} id='126377'
|- {{table_heading_style}}
!Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
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Δcrl (Keio:JW0230)
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deletion
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deletion
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[[PMID:16738554]]<ref name=PMID:16738554/>
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[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]<br>[http://cgsc2.biology.yale.edu/Strain.php?ID=106746 CGSC8465]<ref name='LIB:cgsc'/>
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|-
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xx
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xx
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xx
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Growth Phenotype
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xx
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xxx
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xx
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{{Gene_alleles_help}}
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===Notes===

==Genetic Resources==
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{|class = 'sortable' {{Prettytable}} id='126378'
|- {{table_heading_style}}
!Resource!!Resource Type!!Source!!Notes/Reference
|-
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JW0230
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Plasmid clone
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[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
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[[PMID:16769691]]<ref name=PMID:16769691/>

Status:Clone OK

Primer 1:GCCACGTTACCGAGTGGACACCC

Primer 2:CCCGCCGTTAACTTCACCGGCTC
|-
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[[yafC:Gene|yafC502::Tn10]]
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Linked marker
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CAG18436 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38989 CGSC7328]<ref name='LIB:cgsc'/>
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est. P1 cotransduction: 38% <ref name='LIB:Nichols_linked_Tn'/>

Synonyms:zae-502::Tn10
|-
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[[proA:Gene|proA81::Tn10]]
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Linked marker
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CAG18447 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38993 CGSC7330]<ref name='LIB:cgsc'/>
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est. P1 cotransduction: 94% <ref name='LIB:Nichols_linked_Tn'/>
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===Notes===

==Accessions in Other Databases==
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{|class = 'sortable' {{Prettytable}} id='126379'
|- {{table_heading_style}}
!Database!!Accession!!Notes
|-
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11092 EcoCyc:EG11092]
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|-
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[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
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[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB1084 EchoBASE:EB1084]
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|-
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[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
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[http://chase.ou.edu/macro/searchlink.php?bnum=b0240 EcoliGenExpDB:b0240]
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|-
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[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])
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[http://BioCyc.org/ECOL199310/new-image?object=C0387 ECOL199310CYC:C0387]
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|-
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[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
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[http://ecogene.org/geneinfo.php?eg_id=EG11092 EcoGene:EG11092]
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|-
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[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
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[http://BioCyc.org/ECOO157/new-image?object=CRL ECOO157CYC:CRL]
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|-
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[http://cgsc.biology.yale.edu CGSC] ([[CGSC|EcoliWiki Page]])
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[http://cgsc.biology.yale.edu/cgi-bin/sybgw/cgsc/Site/30625 CGSC:30625]
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{{Gene_accessions_help}}
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===Notes===

==Links==
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==References==
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{{RefHelp}}
<references/>
__NOTOC__
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===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]

EcoliWiki - User contributions [en]

Talk:parC:Evolution

crl:Gene