EcoliWiki - User contributions [en]

hisP:Gene Product(s)

2010-05-04T01:46:13Z

Cruzstpeter: Table edited by Cruzstpeter via TableEdit

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<noinclude>{{TabsTop}}
{{Tab|Quickview|hisP}}{{Tab|Gene|hisP}}{{Tab On|Gene Product(s)|hisP}}{{Tab|Expression|hisP}}{{Tab|Evolution|hisP}}{{Tab|On One Page|hisP}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="V46aaa05c49d42" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
HisP
|-
!align=left {{table heading style}} |Synonyms
||
histidine/lysine/arginine/ornithine transporter subunit<ref name='LIB:Riley_2006'/>, ATP-binding component of ABC superfamily<ref name='LIB:Riley_2006'/>, B2306<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HisP<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!align=left {{table heading style}} |Product description
||
HisP<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>

Histidine permease<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||

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|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| id="Q46aaa05d6176f" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0005515
|
protein binding
|
PMID:16606699
|
IPI: Inferred from Physical Interaction
|
UniProtKB:P0A6F5
|
F
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0000166
|
nucleotide binding
|
GO_REF:0000002 GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR003593 SP_KW:KW-0547
|
F
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0005524
|
ATP binding
|
GO_REF:0000002 GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR003439 SP_KW:KW-0067
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|

|
GO:0015817
|
histidine transport
|
PMID:4920090
|
IMP: Inferred from Mutant Phenotype
|

|
P
|

|
complete
|-
|

|
GO:0006865
|
amino acid transport
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0029
|
P
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0016020
|
membrane
|
GO_REF:0000004 GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0397 SP_KW:KW-0472
|
C
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|

|
GO:0016887
|
ATPase activity
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR003439
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|

|
GO:0017111
|
nucleoside-triphosphatase activity
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR003593
|
F
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0009063
|
amino acid catabolic process
|

|

|

|
P
|
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
|
required fields missing
|-
|

|
GO:0005886
|
plasma membrane
|
GO_REF:0000004 GO_REF:0000004 GO_REF:0000023
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0997 SP_KW:KW-1003 SP_SL:SL-0037
|
C
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0009089
|
lysine biosynthetic process via diaminopimelate
|

|

|

|
P
|
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
|
required fields missing
|-
|

|
GO:0000105
|
histidine biosynthetic process
|
PMID:4920090
|
IDA: Inferred from Direct Assay
|

|
P
|

|
complete
|-
|

|
GO:0006526
|
arginine biosynthetic process
|

|

|

|
P
|
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
|
required fields missing
|-
|

|
GO:0005737
|
cytoplasm
|

|

|

|
C
|
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
|
required fields missing

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|}


<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="G46aaa074bed72" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
groL 
|

|
PMID:16606699
|
Experiment(s):EBI-1142524 

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|}


</protect>
===Notes===

==Localization==

{{Product_localization_help}}
{| id="F46aaa07583b34" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes
|-
|
cytoplasm
|

|

|
From EcoCyc<ref name='LIB:EcoCyc11.1'/>
|

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|}


<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="J46aaa0771f0ea" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=HISP-MONOMER at EcoCyc]
<pre>MSENKLNVID LHKRYGEHEV LKGVSLQANA GDVISIIGSS GSGKSTFLRC INFLEKPSEG
SIVVNGQTIN LVRDKDGQLK VADKNQLRLL RTRLTMVFQH FNLWSHMTVL ENVMEAPIQV
LGLSKQEARE RAVKYLAKVG IDERAQGKYP VHLSGGQQQR VSIARALAME PEVLLFDEPT
SALDPELVGE VLRIMQQLAE EGKTMVVVTH EMGFARHVST HVIFLHQGKI EEEGAPEQLF
GNPQSPRLQR FLKGSLK</pre>
|-
!align=left {{table heading style}} |Length
||
257
|-
!align=left {{table heading style}} |Mol. Wt
||
28.652 kDa
|-
!align=left {{table heading style}} |pI
||
8.1 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
9,970 - 10,095 (calc based on 3 Y, 1 W, and 1 C residues)

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|}


<big>'''Domains/Motifs/Modification Sites'''</big><table>
<tr align="left" valign="top">
<td>
{{Product_domains_motifs_help}}
{| id="Y46aaa0778d078" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24820.Y46aaa0778d078&page=24820&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || || ||
|}
</td>
<td>


<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="E46a837abe2e78" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=hisP
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

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|}


</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="H46aaa07853b40" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
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|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="T46aaa078b09f2" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=HISP-MONOMER EcoCyc:HISP-MONOMER]
|

|-
|
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])
|
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P07109 SwissModel:P07109]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[[uniprot:P07109|UniProt:P07109]]
|

|-
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://pfam.sanger.ac.uk/family?acc=PF00005 PFAM:PF00005]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_416809 RefSeq:NP_416809]
|

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<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="O46a837b0b8be0" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

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|}


<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]
[[Category:GO:0009063_!_amino acid catabolic process]][[Category:GO:0009089_!_lysine biosynthetic process via diaminopimelate]][[Category:GO:0000105_!_histidine biosynthetic process]][[Category:GO:0006526_!_arginine biosynthetic process]][[Category:GO:0005737_!_cytoplasm]][[Category:Location:cytoplasm]]

cheY:Gene Product(s)

2010-05-03T23:20:18Z

Cruzstpeter: Table edited by Cruzstpeter via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|cheY}}{{Tab|Gene|cheY}}{{Tab On|Gene Product(s)|cheY}}{{Tab|Expression|cheY}}{{Tab|Evolution|cheY}}{{Tab|On One Page|cheY}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="M46aa83c8d2f1c" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
CheY
|-
!align=left {{table heading style}} |Synonyms
||
B1882<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!align=left {{table heading style}} |Product description
||
chemotaxis regulator transmitting signal to flagellar motor component<ref name='LIB:Riley_2006'/>

Response regulator for chemotactic signal transduction; CheA is the cognate sensor protein<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||

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|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| id="F46aa83c9ea016" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0006935
|
chemotaxis
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0145
|
P
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0046872
|
metal ion binding
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0479
|
F
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0963
|
C
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|

|
GO:0006355
|
regulation of transcription, DNA-dependent<input name="field[2]" type="hidden" value="regulation of transcription, DNA-dependent" />
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR001789
|
P
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0001539
|
ciliary or flagellar motility
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0283
|
P
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0000287
|
magnesium ion binding
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0460
|
F
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0000160
|
two-component signal transduction system (phosphorelay)
|
GO_REF:0000002 GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR001789 SP_KW:KW-902
|
P
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|

|
GO:0000156
|
two-component response regulator activity
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR001789
|
F
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0042330
|
taxis
|

|

|

|
P
|
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
|
required fields missing
|-
|

|
GO:0006473
|
protein amino acid acetylation
|
PMID:16630631
|
IDA: Inferred from Direct Assay
|

|
P
|

|
complete
|-
|

|
GO:0003998
|
acylphosphatase activity
|
PMID:2558046
|
IDA: Inferred from Direct Assay
|

|
F
|

|
complete

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|}


<big>'''Interactions'''</big>


{{Product_interactions_help}}
{| id="P46aa83d1c7fc3" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
aceE 
|

|
PMID:15690043
|
Experiment(s):EBI-879046, EBI-882443 
|-
|
Protein
|
aceF 
|

|
PMID:15690043
|
Experiment(s):EBI-879046, EBI-882443 
|-
|
Protein
|
lpdA 
|

|
PMID:15690043
|
Experiment(s):EBI-879046 
|-
|
Protein
|
rpsB 
|

|
PMID:16606699
|
Experiment(s):EBI-1141166 
|-
|
Protein
|
nadE 
|

|
PMID:16606699
|
Experiment(s):EBI-1141166 
|-
|
Protein
|
yqjK 
|

|
PMID:16606699
|
Experiment(s):EBI-1141166 

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|}


</protect>
===Notes===

==Localization==

{{Product_localization_help}}
{| id="M46aa83d28b25c" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes
|-
|
cytoplasm
|

|

|
From EcoCyc<ref name='LIB:EcoCyc11.1'/>
|

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|}


<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="L46aa83d3abed7" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=PHOSPHO-CHEY at EcoCyc]
<pre>MADKELKFLV VDDFSTMRRI VRNLLKELGF NNVEEAEDGV DALNKLQAGG YGFVISDWNM
PNMDGLELLK TIRADGAMSA LPVLMVTAEA KKENIIAAAQ AGASGYVVKP FTAATLEEKL
NKIFEKLGM</pre>
|-
!align=left {{table heading style}} |Length
||
129
|-
!align=left {{table heading style}} |Mol. Wt
||
14.097 kDa
|-
!align=left {{table heading style}} |pI
||
4.7 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
8,480 (calc based on 2 Y, 1 W, and C residues)

|- class="tableEdit_footer"
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|}


<big>'''Domains/Motifs/Modification Sites'''</big><table>
<tr align="left" valign="top">
<td>
{{Product_domains_motifs_help}}
{| id="O46aa83d4241ee" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
|-
|
Initiator Methionine
|
1
|
Removed
|
[http://www.uniprot.org/uniprot/P0AE67#section_features UniProt:P0AE67]
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23876.O46aa83d4241ee&page=23876&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || || ||
|}
</td>
<td>


<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="T46aa83d47f76f" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=cheY
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23876.T46aa83d47f76f&page=23876&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
|}


</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="L46aa83ed821bd" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23876.L46aa83ed821bd&page=23876&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="K46aa83edde20b" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=CHEY-MONOMER EcoCyc:CHEY-MONOMER]
|

|-
|
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])
|
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P0AE67 SwissModel:P0AE67]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[[uniprot:P0AE67|UniProt:P0AE67]]
|

|-
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://pfam.sanger.ac.uk/family?acc=PF00072 PFAM:PF00072]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_416396 RefSeq:NP_416396]
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23876.K46aa83edde20b&page=23876&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="T46a814eb7a4fa" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.23876.T46a814eb7a4fa&page=23876&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]
[[Category:Proteins]]
[[Category:GO:0042330_!_taxis]][[Category:GO:0005737_!_cytoplasm]][[Category:Products with structures in PDB]][[Category:Location:cytoplasm]]

cca:Gene Product(s)

2010-05-03T22:45:54Z

Cruzstpeter: Table edited by Cruzstpeter via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|cca}}{{Tab|Gene|cca}}{{Tab On|Gene Product(s)|cca}}{{Tab|Expression|cca}}{{Tab|Evolution|cca}}{{Tab|On One Page|cca}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="E46aacef06e28f" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
Cca
|-
!align=left {{table heading style}} |Synonyms
||
fused tRNA nucleotidyl transferase<ref name='LIB:Riley_2006'/>, 2'3'-cyclic phosphodiesterase and 2'nucleotidase and phosphatase<ref name='LIB:Riley_2006'/>, B3056<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Cca<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!align=left {{table heading style}} |Product description
||
tRNA nucleotidyltransferase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>

tRNA nucleotidyltransferase, repairs terminal CCA of tRNAs<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||
* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.25 2.7.7.25]<ref name='LIB:Riley_2006'/>
* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.4.17 3.1.4.17]<ref name='LIB:Riley_2006'/>

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26530.E46aacef06e28f&page=26530&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table] ||
|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| id="W46aacef181080" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0016791
|
phosphatase activity
|
GO_REF:0000020
|
IEA: Inferred from Electronic Annotation
|
HAMAP:MF_01261
|
F
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0016787
|
hydrolase activity
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0378
|
F
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0016779
|
nucleotidyltransferase activity
|
GO_REF:0000002 GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002646 SP_KW:KW-0548
|
F
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0016740
|
transferase activity
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0808
|
F
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0016437
|
tRNA cytidylyltransferase activity
|
GO_REF:0000003 GO_REF:0000020
|
IEA: Inferred from Electronic Annotation
|
EC:2.7.7.21 HAMAP:MF_01261
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|

|
GO:0016151
|
nickel ion binding
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0533
|
F
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0006396
|
RNA processing
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002646
|
P
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0008033
|
tRNA processing
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0819
|
P
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0005524
|
ATP binding
|
GO_REF:0000002 GO_REF:0000004 GO_REF:0000020
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012006 SP_KW:KW-0067 HAMAP:MF_01261
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|

|
GO:0004810
|
tRNA adenylyltransferase activity
|
GO_REF:0000002 GO_REF:0000003 GO_REF:0000020
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012006 EC:2.7.7.25 HAMAP:MF_01261
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|

|
GO:0004112
|
cyclic-nucleotide phosphodiesterase activity
|
GO_REF:0000020
|
IEA: Inferred from Electronic Annotation
|
HAMAP:MF_01261
|
F
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0003824
|
catalytic activity
|
GO_REF:0000002 GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR003607 SP_KW:KW-0511
|
F
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0003723
|
RNA binding
|
GO_REF:0000002 GO_REF:0000002 GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002646 InterPro:IPR012006 SP_KW:KW-0694
|
F
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0000049
|
tRNA binding
|
GO_REF:0000020
|
IEA: Inferred from Electronic Annotation
|
HAMAP:MF_01261
|
F
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0000166
|
nucleotide binding
|
GO_REF:0000004 GO_REF:0000020
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0547 HAMAP:MF_01261
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|

|
GO:0000287
|
magnesium ion binding
|
GO_REF:0000004 GO_REF:0000020
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0460 HAMAP:MF_01261
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|

|
GO:0001680
|
tRNA 3'-terminal CCA addition
|
GO_REF:0000002 GO_REF:0000020
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR012006 HAMAP:MF_01261
|
P
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|

|
GO:0042245
|
RNA repair
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0692
|
P
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0046872
|
metal ion binding
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0479
|
F
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0005515
|
protein binding
|
PMID:15690043
|
IPI: Inferred from Physical Interaction
|
UniProtKB:P0A6M4
|
F
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|

|

|

|
C
|
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
|
required fields missing
|-
|

|
GO:0009451
|
RNA modification
|

|

|

|
P
|
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
|
required fields missing
|-
|

|
GO:0016779
|
nucleotidyltransferase activity
|
PMID:8809016
|

|

|
F
|

|
Missing: evidence

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26530.W46aacef181080&page=26530&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
|}


<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="A46aacefdb8027" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
pflB 
|

|
PMID:15690043
|
Experiment(s):EBI-888051 
|-
|
Protein
|
rplC 
|

|
PMID:15690043
|
Experiment(s):EBI-888051 
|-
|
Protein
|
rpsB 
|

|
PMID:15690043
|
Experiment(s):EBI-888051 
|-
|
Protein
|
tufA 
|

|
PMID:15690043
|
Experiment(s):EBI-888051 
|-
|
Protein
|
rplB 
|

|
PMID:16606699
|
Experiment(s):EBI-1144661 
|-
|
Protein
|
nadE 
|

|
PMID:16606699
|
Experiment(s):EBI-1144661 
|-
|
Protein
|
mukE 
|

|
PMID:16606699
|
Experiment(s):EBI-1144661 
|-
|
Protein
|
rplQ 
|

|
PMID:16606699
|
Experiment(s):EBI-1144661 
|-
|
Protein
|
htrE 
|

|
PMID:16606699
|
Experiment(s):EBI-1144661 
|-
|
Protein
|
rpsI 
|

|
PMID:16606699
|
Experiment(s):EBI-1144661 
|-
|
Protein
|
ygjK 
|

|
PMID:16606699
|
Experiment(s):EBI-1144661 

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|}


</protect>
===Notes===

==Localization==

{{Product_localization_help}}
{| id="T46a86377163ab" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26530.T46a86377163ab&page=26530&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || || ||
|}


<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="U46aaceffa5b51" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=EG10136-MONOMER at EcoCyc]
<pre>MKIYLVGGAV RDALLGLPVK DRDWVVVGST PQEMLDAGYQ QVGRDFPVFL HPQTHEEYAL
ARTERKSGSG YTGFTCYAAP DVTLEDDLKR RDLTINALAQ DDNGEIIDPY NGLGDLQNRL
LRHVSPAFGE DPLRVLRVAR FAARYAHLGF RIADETLALM REMTHAGELE HLTPERVWKE
TESALTTRNP QVFFQVLRDC GALRVLFPEI DALFGVPAPA KWHPEIDTGI HTLMTLSMAA
MLSPQVDVRF ATLCHDLGKG LTPPELWPRH HGHGPAGVKL VEQLCQRLRV PNEIRDLARL
VAEFHDLIHT FPMLNPKTIV KLFDSIDAWR KPQRVEQLAL TSEADVRGRT GFESADYPQG
RWLREAWEVA QSVPTKAVVE AGFKGVEIRE ELTRRRIAAV ASWKEQRCPK PE</pre>
|-
!align=left {{table heading style}} |Length
||
412
|-
!align=left {{table heading style}} |Mol. Wt
||
46.466 kDa
|-
!align=left {{table heading style}} |pI
||
6.6 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
55,920 - 56,545 (calc based on 8 Y, 8 W, and 5 C residues)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26530.U46aaceffa5b51&page=26530&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
|}


<big>'''Domains/Motifs/Modification Sites'''</big><table>
<tr align="left" valign="top">
<td>
{{Product_domains_motifs_help}}
{| id="Z46aacf00228ab" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26530.Z46aacf00228ab&page=26530&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || || ||
|}
</td>
<td>


<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="Q46a86378aa011" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=cca
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26530.Q46a86378aa011&page=26530&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
|}


</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="E46aacf00e2c4e" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26530.E46aacf00e2c4e&page=26530&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
|}


<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="X46aacf014ea41" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10136-MONOMER EcoCyc:EG10136-MONOMER]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[[uniprot:P06961|UniProt:P06961]]
|

|-
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://pfam.sanger.ac.uk/family?acc=PF01743 PFAM:PF01743]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_417528 RefSeq:NP_417528]
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26530.X46aacf014ea41&page=26530&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="K46a8637c1e471" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26530.K46a8637c1e471&page=26530&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}


<noinclude>
==References==
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<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]
[[Category:GO:0005737_!_cytoplasm]][[Category:GO:0009451_!_RNA modification]]

cbpA:Gene Product(s)

2010-05-03T22:09:46Z

Cruzstpeter: Table edited by Cruzstpeter via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|cbpA}}{{Tab|Gene|cbpA}}{{Tab On|Gene Product(s)|cbpA}}{{Tab|Expression|cbpA}}{{Tab|Evolution|cbpA}}{{Tab|On One Page|cbpA}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="W46aa510fdc21e" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
CbpA
|-
!align=left {{table heading style}} |Synonyms
||
curved DNA-binding protein, DnaJ homologue that functions as a co-chaperone of DnaK<ref name='LIB:Riley_2006'/>, B1000<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CbpA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!align=left {{table heading style}} |Product description
||
CbpA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;

Component of [[:Category:Complex:chaperone with DnaK; curved DNA-binding protein|chaperone with DnaK; curved DNA-binding protein]]<ref name='LIB:EcoCyc11.1'/>

DnaK co-chaperone; also binds curved DNA<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||

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|}


<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| id="E46aa51113ea6d" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0051082
|
unfolded protein binding
|
GO_REF:0000002 GO_REF:0000002 GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002939 InterPro:IPR003095 InterPro:IPR008971
|
F
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0031072
|
heat shock protein binding
|
GO_REF:0000002 GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR001623 InterPro:IPR003095
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|

|
GO:0006457
|
protein folding
|
GO_REF:0000002 GO_REF:0000002 GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002939 InterPro:IPR003095 InterPro:IPR008971
|
P
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0963
|
C
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|

|
GO:0003681
|
bent DNA binding
|
GO_REF:0000020
|
IEA: Inferred from Electronic Annotation
|
HAMAP:MF_01154
|
F
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0003677
|
DNA binding
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0238
|
F
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
PMID:16858726
|
IDA: Inferred from Direct Assay
|

|
C
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|

|
GO:0003681
|
bent DNA binding
|
PMID:10551881
|
IDA: Inferred from Direct Assay
|

|
F
|

|
complete

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|}


<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="R46aa51185215a" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
Subunits of [[:Category:Complex:chaperone with DnaK; curved DNA-binding protein|chaperone with DnaK; curved DNA-binding protein]]
|
could be indirect
|

|

|-
|
Protein
|
prsA 
|

|
PMID:15690043
|
Experiment(s):EBI-885677 
|-
|
Protein
|
rplI 
|

|
PMID:15690043
|
Experiment(s):EBI-885677 
|-
|
Protein
|
rplS 
|

|
PMID:15690043
|
Experiment(s):EBI-885677 
|-
|
Protein
|
rplV 
|

|
PMID:15690043
|
Experiment(s):EBI-885677 
|-
|
Protein
|
rplX 
|

|
PMID:15690043
|
Experiment(s):EBI-885677 
|-
|
Protein
|
rpoC 
|

|
PMID:15690043
|
Experiment(s):EBI-885677 
|-
|
Protein
|
rpsA 
|

|
PMID:15690043
|
Experiment(s):EBI-885677 
|-
|
Protein
|
rpsB 
|

|
PMID:15690043
|
Experiment(s):EBI-885677, EBI-892312 
|-
|
Protein
|
rpsC 
|

|
PMID:15690043
|
Experiment(s):EBI-885677 
|-
|
Protein
|
rpsD 
|

|
PMID:15690043
|
Experiment(s):EBI-885677 
|-
|
Protein
|
rpsE 
|

|
PMID:15690043
|
Experiment(s):EBI-885677 
|-
|
Protein
|
rpsG 
|

|
PMID:15690043
|
Experiment(s):EBI-885677, EBI-892312 
|-
|
Protein
|
rpsM 
|

|
PMID:15690043
|
Experiment(s):EBI-885677 
|-
|
Protein
|
srmB 
|

|
PMID:15690043
|
Experiment(s):EBI-885677 
|-
|
Protein
|
tufA 
|

|
PMID:15690043
|
Experiment(s):EBI-885677 
|-
|
Protein
|
ygiF 
|

|
PMID:15690043
|
Experiment(s):EBI-885677 
|-
|
Protein
|
aidB 
|

|
PMID:15690043
|
Experiment(s):EBI-885677 
|-
|
Protein
|
clpA 
|

|
PMID:15690043
|
Experiment(s):EBI-885677 
|-
|
Protein
|
clpB 
|

|
PMID:15690043
|
Experiment(s):EBI-885677 
|-
|
Protein
|
deaD 
|

|
PMID:15690043
|
Experiment(s):EBI-885677 
|-
|
Protein
|
dnaK 
|

|
PMID:15690043
|
Experiment(s):EBI-885677, EBI-892312 
|-
|
Protein
|
fabZ 
|

|
PMID:15690043
|
Experiment(s):EBI-885677 
|-
|
Protein
|
hscA 
|

|
PMID:15690043
|
Experiment(s):EBI-885677 
|-
|
Protein
|
infC 
|

|
PMID:15690043
|
Experiment(s):EBI-885677 
|-
|
Protein
|
metK 
|

|
PMID:15690043
|
Experiment(s):EBI-885677 
|-
|
Protein
|
mukB 
|

|
PMID:15690043
|
Experiment(s):EBI-885677 
|-
|
Protein
|
rho 
|

|
PMID:15690043
|
Experiment(s):EBI-885677 
|-
|
Protein
|
rplA 
|

|
PMID:15690043
|
Experiment(s):EBI-885677 
|-
|
Protein
|
rplB 
|

|
PMID:15690043
|
Experiment(s):EBI-885677 
|-
|
Protein
|
rplC 
|

|
PMID:15690043
|
Experiment(s):EBI-885677 
|-
|
Protein
|
rplD 
|

|
PMID:15690043
|
Experiment(s):EBI-885677 
|-
|
Protein
|
rplE 
|

|
PMID:15690043
|
Experiment(s):EBI-885677 
|-
|
Protein
|
rplF 
|

|
PMID:15690043
|
Experiment(s):EBI-885677 
|-
|
Protein
|
rbsK 
|

|
PMID:15690043
|
Experiment(s):EBI-892312 
|-
|
Protein
|
rplL 
|

|
PMID:15690043
|
Experiment(s):EBI-892312 
|-
|
Protein
|
rpmC 
|

|
PMID:15690043
|
Experiment(s):EBI-892312 
|-
|
Protein
|
rpmG 
|

|
PMID:15690043
|
Experiment(s):EBI-892312 
|-
|
Protein
|
rpsP 
|

|
PMID:15690043
|
Experiment(s):EBI-892312 
|-
|
Protein
|
ugpB 
|

|
PMID:15690043
|
Experiment(s):EBI-892312 
|-
|
Protein
|
yfbT 
|

|
PMID:15690043
|
Experiment(s):EBI-892312 
|-
|
Protein
|
tusC 
|

|
PMID:15690043
|
Experiment(s):EBI-892312 
|-
|
Protein
|
yjfK 
|

|
PMID:15690043
|
Experiment(s):EBI-892312 
|-
|
Protein
|
dnaK 
|

|
PMID:16606699
|
Experiment(s):EBI-1138573 
|-
|
Protein
|
nadE 
|

|
PMID:16606699
|
Experiment(s):EBI-1138573 
|-
|
Protein
|
rplB 
|

|
PMID:16606699
|
Experiment(s):EBI-1138573 
|-
|
Protein
|
groL 
|

|
PMID:16606699
|
Experiment(s):EBI-1138573 
|-
|
Protein
|
yjeJ 
|

|
PMID:16606699
|
Experiment(s):EBI-1138573 
|-
|
Protein
|
lon 
|

|
PMID:16606699
|
Experiment(s):EBI-1138573 
|-
|
Protein
|
rplD 
|

|
PMID:16606699
|
Experiment(s):EBI-1138573 

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</protect>
===Notes===

==Localization==

{{Product_localization_help}}
{| id="A46a7e3382faf9" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes

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<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="F46aa511a73528" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=EG12193-MONOMER at EcoCyc]
<pre>MELKDYYAIM GVKPTDDLKT IKTAYRRLAR KYHPDVSKEP DAEARFKEVA EAWEVLSDEQ
RRAEYDQMWQ HRNDPQFNRQ FHHGDGQSFN AEDFDDIFSS IFGQHARQSR QRPATRGHDI
EIEVAVFLEE TLTEHKRTIS YNLPVYNAFG MIEQEIPKTL NVKIPAGVGN GQRIRLKGQG
TPGENGGPNG DLWLVIHIAP HPLFDIVGQD LEIVVPVSPW EAALGAKVTV PTLKESILLT
IPPGSQAGQR LRVKGKGLVS KKQTGDLYAV LKIVMPPKPD ENTAALWQQL ADAQSSFDPR
KDWGKA</pre>
|-
!align=left {{table heading style}} |Length
||
306
|-
!align=left {{table heading style}} |Mol. Wt
||
34.455 kDa
|-
!align=left {{table heading style}} |pI
||
6.8 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
44,920 (calc based on 8 Y, 6 W, and C residues)

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|}


<big>'''Domains/Motifs/Modification Sites'''</big><table>
<tr align="left" valign="top">
<td>
{{Product_domains_motifs_help}}
{| id="U46aa511acf8ce" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References

|- class="tableEdit_footer"
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|}
</td>
<td>


<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="P46a7e339ddbfc" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=cbpA
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

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|}


</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="H46aa511b756aa" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
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<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="I46aa511bc20d8" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12193-MONOMER EcoCyc:EG12193-MONOMER]
|

|-
|
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])
|
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P36659 SwissModel:P36659]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[[uniprot:P36659|UniProt:P36659]]
|

|-
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://pfam.sanger.ac.uk/family?acc=PF00226 PFAM:PF00226]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_415520 RefSeq:NP_415520]
|

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|}


<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{| id="N46a7e33e12269" class=" tableEdit Links_table"
|- {{table_heading_style}}
!|Name!!URL!!Comments

|- class="tableEdit_footer"
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|}


<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]
[[Category:GO:0006457_!_protein folding]][[Category:GO:0005737_!_cytoplasm]][[Category:Complex:chaperone with DnaK; curved DNA-binding protein]]