pdxK:Gene Product(s)

2007-11-29T21:29:18Z

Cindy: edited by Cindy via TableEdit

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|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
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==Nomenclature==


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!{{table heading style}} |Standard name
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PdxK product
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!{{table heading style}} |Synonyms
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pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase product<ref name='LIB:Riley_2006'/>, B2418 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PdxL product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ThiJ product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfeI product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PdxK product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
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!{{table heading style}} |Product description
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PdxK<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;

Component of ; [[:Category:Complex:PDXK-CPLX|PDXK-CPLX]]<ref name='LIB:EcoCyc10.6'/>

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!{{table heading style}} |EC number (for enzymes)
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** [http://www.brenda.uni-koeln.de/php/result_flat.php4?ecno=2.7.1.35 2.7.1.35]<ref name='LIB:Riley_2006'/>
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===Notes===

==Function==
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<big>'''Gene Ontology'''</big>


{|class = 'sortable' {{Prettytable}} id='169228'
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!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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GO:0005737
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cytoplasm
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C
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Seeded from Riley et al 2006 <ref name='LIB:Riley_2006'/>.
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required fields missing
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GO:0009443
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pyridoxal 5'-phosphate salvage
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P
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Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
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required fields missing
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GO:0008478
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pyridoxal kinase activity
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PMID 4917899, PMID 8764513
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F
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required field missing
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<big>'''Interactions'''</big>


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!Partner Type!!Partner!!Notes
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Protein
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Subunits of [[:Category:Complex:PDXK-CPLX|PDXK-CPLX]]
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could be indirect
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===Notes===

==Localization==


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!Compartment!!Description!!Evidence!!Notes
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===Notes===

==Structure and Physical Properties==
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<big>'''Physical Properties'''</big>


{|{{Prettytable}}
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!{{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=PDXK-MONOMER at EcoCyc]
<pre>MSSLLLFNDK SRALQADIVA VQSQVVYGSV GNSIAVPAIK QNGLNVFAVP TVLLSNTPHY
DTFYGGAIPD EWFSGYLRAL QERDALRQLR AVTTGYMGTA SQIKILAEWL TALRKDHPDL
LIMVDPVIGD IDSGIYVKPD LPEAYRQYLL PLAQGITPNI FELEILTGKN CRDLDSAIAA
AKSLLSDTLK WVVVTSASGN EENQEMQVVV VTADSVNVIS HSRVKTDLKG TGDLFCAQLI
SGLLKGKALT DAVHRAGLRV LEVMRYTQQH ESDELILPPL AEA</pre>
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!{{table heading style}} |Mol. Wt
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30.85 kDa (calc) <ref name='LIB:EcoCyc10.6'/>
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!{{table heading style}} |pI
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!{{table heading style}} |Extinction coefficient
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29910 - 30160 (calc based on 9 Y, 3 W, and 2 C residues)
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<big>'''Domains/Motifs/Modification Sites'''</big>


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!Type!!Residues!!Description!!Notes
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<big>'''Structure'''</big>


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!Structure Type!!Organism!!Accession!!Residues covered!!Notes
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===Notes===

==Gene Product Resources==
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!Resource type!!Source!!Notes/Reference
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===Notes===

==Accessions in Other Databases==
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!Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=PDXK-MONOMER EcoCyc:PDXK-MONOMER]
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[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
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[http://www.expasy.ch/cgi-bin/sprot-search-ac?P40191 UniProt:P40191]
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[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
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[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_416913 RefSeq:NP_416913]
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[http://modbase.compbio.ucsf.edu ModBase] ([[ModBase|EcoliWiki Page]])
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[http://salilab.org/modbase/searchbyid?databaseID=P40191 ModBase:P40191]
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===Notes===

==Links==
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==References==
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<references/>
__NOTOC__
</noinclude>
===Categories===
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[[Category:Proteins]]
[[Category:GO:0005737_!_cytoplasm]][[Category:GO:0009443_!_pyridoxal 5\'-phosphate salvage]][[Category:Complex:PDXK-CPLX]]

EcoliWiki - User contributions [en]

pdxK:Gene Product(s)