https://ecoliwiki.org/colipedia/api.php?action=feedcontributions&feedformat=atom&user=Benedik EcoliWiki - User contributions [en] 2026-11-02T15:07:28Z User contributions MediaWiki 1.43.11 https://ecoliwiki.org/colipedia/index.php?title=alr:Quickview&diff=308052 alr:Quickview 2007-08-09T19:06:30Z <p>Benedik: edited by Benedik via TableEdit</p> <hr /> <div>&lt;!--<br /> ***************************************************************************************************************************************************<br /> *<br /> *<br /> * PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE,<br /> * YOU'RE PROBABLY IN THE WRONG PLACE<br /> *<br /> *<br /> ***************************************************************************************************************************************************<br /> --&gt;{{#css:Suppresslinks.css}}&lt;css&gt;{{:Suppresslinks.css}}&lt;/css&gt;<br /> &lt;noinclude&gt;{{TabsTop}} <br /> {{Tab On|Quickview|alr}}{{Tab|Gene|alr}}{{Tab|Gene Product(s)|alr}}{{Tab|Expression|alr}}{{Tab|Evolution|alr}}{{Tab|On One Page|alr}}{{TabsBottom}}<br /> {|<br /> |- style=&quot;background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;&quot; <br /> |{{Sub}}[[#References| References]]<br /> |{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]<br /> |}<br /> &lt;/noinclude&gt;<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.9852.H46a9a2e4ad962--&gt;<br /> &lt;!--<br /> ******************************************************************************************<br /> *<br /> * ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. **<br /> *<br /> ****************************************************************************************** --&gt;<br /> {|{{Prettytable}}<br /> |-<br /> !{{table_heading_style}} |Gene Name<br /> |<br /> [[alr:Gene|''alr]]'' (synonyms: ''ECK4045, b4053, JW4013, alr5'')&lt;ref name='LIB:Riley_2006'/&gt;<br /> |-<br /> !{{table_heading_style}} |Product(s) <br /> |<br /> [[alr:Gene_Product(s)|Alr product]]&lt;ref name='LIB:Riley_2006'/&gt;: alanine racemase 1, PLP-binding, biosynthetic product, B4053 product<br /> |-<br /> !{{table_heading_style}} |Description <br /> |<br /> Alr&lt;ref name='LIB:EcoCyc10.6'/&gt; alanine racemase 1, PLP-binding, biosynthetic&lt;ref name='LIB:EcoCyc11.1'/&gt; <br /> <br /> Component of [[:Category:Complex:alanine racemase, minor|alanine racemase, minor]]&lt;ref name='LIB:EcoCyc10.6'/&gt;<br /> <br /> |-<br /> !{{table_heading_style}} |Knock-Out Phenotype <br /> |<br /> No D-alanine auxotrophy except in the double ΔalrΔdadX mutant. Either Alr or DadX supplies sufficient D-alanine for cell wall biosynthesis. <br /> |-<br /> !{{table_heading_style}} |Regulation/Expression <br /> |<br /> transcription unit(s): [[:Category:Txn_unit:alr|alr]]&lt;ref name='LIB:EcoCyc10.6'/&gt; <br /> |-<br /> !{{table_heading_style}} |Regulation/Activity<br /> |<br /> low level constitutive<br /> |-<br /> |colspan='2'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&amp;id=421aa90e079fa326b6494f812ad13e79.9852.H46a9a2e4ad962&amp;page=9852&amp;pagename={{FULLPAGENAMEE}} edit table]<br /> |}<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.9852.H46a9a2e4ad962--&gt;<br /> {{Quickview_table_help}}<br /> &lt;protect&gt;&lt;!--Quickview_notes--&gt;&lt;/protect&gt;<br /> ===Notes===<br /> {{BacktoTop}}<br /> <br /> <br /> &lt;noinclude&gt;<br /> ==References==<br /> {{BacktoTop}}<br /> {{RefHelp}}<br /> &lt;references/&gt;<br /> &lt;/noinclude&gt;</div> Benedik https://ecoliwiki.org/colipedia/index.php?title=dadX:Quickview&diff=308050 dadX:Quickview 2007-08-09T19:05:39Z <p>Benedik: edited by Benedik via TableEdit</p> <hr /> <div>&lt;!--<br /> ***************************************************************************************************************************************************<br /> *<br /> *<br /> * PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE,<br /> * YOU'RE PROBABLY IN THE WRONG PLACE<br /> *<br /> *<br /> ***************************************************************************************************************************************************<br /> --&gt;{{#css:Suppresslinks.css}}&lt;css&gt;{{:Suppresslinks.css}}&lt;/css&gt;<br /> &lt;noinclude&gt;{{TabsTop}} <br /> {{Tab On|Quickview|dadX}}{{Tab|Gene|dadX}}{{Tab|Gene Product(s)|dadX}}{{Tab|Expression|dadX}}{{Tab|Evolution|dadX}}{{Tab|On One Page|dadX}}{{TabsBottom}}<br /> {|<br /> |- style=&quot;background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;&quot; <br /> |{{Sub}}[[#References| References]]<br /> |{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]<br /> |}<br /> &lt;/noinclude&gt;<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.4119.G46a99d90a301a--&gt;<br /> &lt;!--<br /> ******************************************************************************************<br /> *<br /> * ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. **<br /> *<br /> ****************************************************************************************** --&gt;<br /> {|{{Prettytable}}<br /> |-<br /> !{{table_heading_style}} |Gene Name<br /> |<br /> [[dadX:Gene|''dadX]]'' (synonyms: ''ECK1178, b1190, JW1179, alnA, alnB, dadB, msuA?'')&lt;ref name='LIB:Riley_2006'/&gt;&lt;ref name='LIB:EcoCyc10.6'/&gt;<br /> |-<br /> !{{table_heading_style}} |Product(s) <br /> |<br /> [[dadX:Gene_Product(s)|DadX product]]&lt;ref name='LIB:Riley_2006'/&gt;: alanine racemase 2, PLP-binding product, B1190 product, DadB product, AlnB product, AlnA product, alanine racemase product<br /> |-<br /> !{{table_heading_style}} |Description <br /> |<br /> ALARACECAT-MONOMER&lt;ref name='LIB:EcoCyc10.6'/&gt;&lt;ref name='LIB:EcoCyc11.1'/&gt; <br /> <br /> Component of [[:Category:Complex:alanine racemase 2, PLP-binding|alanine racemase 2, PLP-binding]]&lt;ref name='LIB:EcoCyc11.1'/&gt;<br /> <br /> |-<br /> !{{table_heading_style}} |Knock-Out Phenotype <br /> |<br /> ΔdadX fails to grow on L-alanine as sole carbon source. No D-alanine auxotrophy except in the double ΔalrΔdadX mutant. Either Alr or DadX supplies sufficient D-alanine for cell wall biosynthesis. <br /> |-<br /> !{{table_heading_style}} |Regulation/Expression <br /> |<br /> transcription unit(s): [[:Category:Txn_unit:dadAX|dadAX]]&lt;ref name='LIB:EcoCyc10.6'/&gt;, dad <br /> |-<br /> !{{table_heading_style}} |Regulation/Activity<br /> |<br /> Induced by L-alanine. Converts L- to D-alanine for catabolism.<br /> |-<br /> |colspan='2'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&amp;id=421aa90e079fa326b6494f812ad13e79.4119.G46a99d90a301a&amp;page=4119&amp;pagename={{FULLPAGENAMEE}} edit table]<br /> |}<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.4119.G46a99d90a301a--&gt;<br /> {{Quickview_table_help}}<br /> &lt;protect&gt;&lt;!--Quickview_notes--&gt;&lt;/protect&gt;<br /> ===Notes===<br /> {{BacktoTop}}<br /> <br /> <br /> &lt;noinclude&gt;<br /> ==References==<br /> {{BacktoTop}}<br /> {{RefHelp}}<br /> &lt;references/&gt;<br /> &lt;/noinclude&gt;</div> Benedik https://ecoliwiki.org/colipedia/index.php?title=dadX:Expression&diff=308048 dadX:Expression 2007-08-09T19:02:54Z <p>Benedik: /* Notes */</p> <hr /> <div>&lt;!--<br /> ***************************************************************************************************************************************************<br /> *<br /> *<br /> * PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE,<br /> * YOU'RE PROBABLY IN THE WRONG PLACE<br /> *<br /> *<br /> ***************************************************************************************************************************************************<br /> --&gt;{{#css:Suppresslinks.css}}&lt;css&gt;{{:Suppresslinks.css}}&lt;/css&gt;<br /> &lt;noinclude&gt;{{TabsTop}}<br /> {{Tab|Quickview|dadX}}{{Tab|Gene|dadX}}{{Tab|Gene Product(s)|dadX}}{{Tab On|Expression|dadX}}{{Tab|Evolution|dadX}}{{Tab|On One Page|dadX}}{{TabsBottom}}<br /> {|<br /> |- <br /> |{{Sub}}[[#Overview|Overview]] <br /> |{{Sub}}[[#Transcription and Transcriptional Regulation|Transcription]]<br /> |{{Sub}}[[#Translation and Regulation of Translation|Translation]]<br /> |{{Sub}}[[#Turnover and Regulation of Turnover|Turnover]]<br /> |{{Sub}}[[#Experimental|Experimental]]<br /> |{{Sub}}[[#Links| Links]]<br /> |{{Sub}}[[#References| References]]<br /> |{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]<br /> |}<br /> &lt;/noinclude&gt;<br /> ==Overview==<br /> {{Expression_overview_placeholder}}<br /> ==Transcription and Transcriptional Regulation==<br /> {{BacktoTop}}<br /> &lt;protect&gt;<br /> {|{{Prettytable}}<br /> |-<br /> |&lt;!--box uid=421aa90e079fa326b6494f812ad13e79.35559.L46ab4cb7a5212--&gt;<br /> &lt;!--<br /> ******************************************************************************************<br /> *<br /> * ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. **<br /> *<br /> ****************************************************************************************** --&gt;<br /> {|class = 'sortable' {{Prettytable}} id='190833' <br /> |- {{table heading style}}<br /> !Transcription unit(s)<br /> |-<br /> |<br /> [[:Category:Txn_unit:dadAX|dadAX]] <br /> |-class='sortbottom'<br /> |[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&amp;id=421aa90e079fa326b6494f812ad13e79.35559.L46ab4cb7a5212&amp;page=35559&amp;pagename={{FULLPAGENAMEE}} edit table]<br /> |}<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.35559.L46ab4cb7a5212--&gt;||{{RegulonDBfig|ECK120001374.jpg|DADX}}<br /> |}<br /> {{expression_transcription_help}}<br /> &lt;!--Transcription_notes--&gt;&lt;/protect&gt;<br /> ===Notes===<br /> Expression induced by L-alanine.<br /> <br /> ==Translation and Regulation of Translation==<br /> {{BacktoTop}}<br /> &lt;protect&gt;{{GBrowseFigureByCoord|1238082|1238122|ecoli|MG1655|Genes_unlabeled+DNA_unlabeled|400|{{Nterm_closeup}} }}<br /> &lt;!--Translation_notes--&gt;&lt;/protect&gt;<br /> ===Notes===<br /> {{Expression_translation_placeholder}}<br /> <br /> ==Turnover and Regulation of Turnover==<br /> &lt;!--Turnover_notes--&gt;&lt;/protect&gt;<br /> <br /> ===Notes===<br /> {{Expression_turnover_placeholder}}<br /> <br /> ==Experimental==<br /> {{BacktoTop}}<br /> &lt;protect&gt;<br /> &lt;big&gt;'''Mutations Affecting Expression'''&lt;/big&gt;<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.35559.B46ab4cb86e8fa--&gt;<br /> &lt;!--<br /> ******************************************************************************************<br /> *<br /> * ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. **<br /> *<br /> ****************************************************************************************** --&gt;<br /> {|class = 'sortable' {{Prettytable}} id='190834' <br /> |- {{table_heading_style}}<br /> !Allele Name!!Mutation!!Phenotype!!Reference<br /> |-class='sortbottom'<br /> |[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&amp;id=421aa90e079fa326b6494f812ad13e79.35559.B46ab4cb86e8fa&amp;page=35559&amp;pagename={{FULLPAGENAMEE}} edit table] || || ||<br /> |}<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.35559.B46ab4cb86e8fa--&gt;<br /> {{Expression_allele_table_help}}<br /> <br /> &lt;big&gt;'''Expression Studies'''&lt;/big&gt;<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.35559.A46ab4cb8d8f1d--&gt;<br /> &lt;!--<br /> ******************************************************************************************<br /> *<br /> * ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. **<br /> *<br /> ****************************************************************************************** --&gt;<br /> {|class = 'sortable' {{Prettytable}} id='190835' <br /> |- {{table heading style}}<br /> !Type!!Reference!!Notes<br /> |-<br /> |<br /> microarray <br /> |<br /> [http://chase.ou.edu/macro/searchlink.php?bnum=b1190 EcoliGenExpDB:b1190] ([[EcoliGenExpDB|EcoliWiki Page]]) <br /> |<br /> Summary of data for dadX from multiple microarray studies <br /> |-class='sortbottom'<br /> |[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&amp;id=421aa90e079fa326b6494f812ad13e79.35559.A46ab4cb8d8f1d&amp;page=35559&amp;pagename={{FULLPAGENAMEE}} edit table] || ||<br /> |}<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.35559.A46ab4cb8d8f1d--&gt;<br /> {{Expression_studies_table_help}}<br /> <br /> &lt;big&gt;'''Expression Resources'''&lt;/big&gt;<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.35559.E46ab4cb94f22f--&gt;<br /> &lt;!--<br /> ******************************************************************************************<br /> *<br /> * ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. **<br /> *<br /> ****************************************************************************************** --&gt;<br /> {|class = 'sortable' {{Prettytable}} id='190836' <br /> |- {{table heading style}}<br /> !Resource Name!!Resource Type!!Description!!Source!!Notes<br /> |-class='sortbottom'<br /> |[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&amp;id=421aa90e079fa326b6494f812ad13e79.35559.E46ab4cb94f22f&amp;page=35559&amp;pagename={{FULLPAGENAMEE}} edit table] || || || ||<br /> |}<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.35559.E46ab4cb94f22f--&gt;<br /> {{Expression_resource_table_help}}<br /> &lt;protect&gt;&lt;!--Expression_experimental_notes--&gt;&lt;/protect&gt;<br /> ===Notes===<br /> <br /> <br /> ==Accessions Related to ''dadX'' Expression==<br /> {{BacktoTop}}<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.35559.T46ab4cb9ba597--&gt;<br /> &lt;!--<br /> ******************************************************************************************<br /> *<br /> * ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. **<br /> *<br /> ****************************************************************************************** --&gt;<br /> {|class = 'sortable' {{Prettytable}} id='190837' <br /> |- {{table_heading_style}}<br /> !Database!!Accession!!Notes<br /> |-<br /> |<br /> [http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]]) <br /> |<br /> [http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&amp;object=EG11408 EcoCyc:EG11408] <br /> |<br /> <br /> |-<br /> |<br /> [http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]]) <br /> |<br /> [http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB1380 EchoBASE:EB1380] <br /> |<br /> <br /> |-<br /> |<br /> [http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]]) <br /> |<br /> [http://chase.ou.edu/macro/searchlink.php?bnum=b1190 EcoliGenExpDB:b1190] <br /> |<br /> <br /> |-<br /> |<br /> [http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]]) <br /> |<br /> [http://ecogene.org/geneinfo.php?eg_id=EG11408 EcoGene:EG11408] <br /> |<br /> <br /> |-class='sortbottom'<br /> |[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&amp;id=421aa90e079fa326b6494f812ad13e79.35559.T46ab4cb9ba597&amp;page=35559&amp;pagename={{FULLPAGENAMEE}} edit table] || ||<br /> |}<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.35559.T46ab4cb9ba597--&gt;<br /> {{Expression_accessions_table_help}}<br /> &lt;protect&gt;&lt;!--Accessions_notes--&gt;&lt;/protect&gt;<br /> ===Notes===<br /> <br /> <br /> ==Links==<br /> {{BacktoTop}}<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.35559.G46a7b4fc70ac9--&gt;<br /> &lt;!--<br /> ******************************************************************************************<br /> *<br /> * ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. **<br /> *<br /> ****************************************************************************************** --&gt;<br /> {|class = 'sortable' {{Prettytable}} id='102285' <br /> |- {{table_heading_style}}<br /> !Name!!URL!!Comments<br /> |-class='sortbottom'<br /> |[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&amp;id=421aa90e079fa326b6494f812ad13e79.35559.G46a7b4fc70ac9&amp;page=35559&amp;pagename={{FULLPAGENAMEE}} edit table] || ||<br /> |}<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.35559.G46a7b4fc70ac9--&gt;<br /> {{Links_help}}<br /> &lt;noinclude&gt;<br /> ==References==<br /> {{BacktoTop}}<br /> {{RefHelp}}<br /> &lt;references/&gt;<br /> __NOTOC__<br /> &lt;/noinclude&gt;<br /> ===Categories===<br /> {{BacktoTop}}<br /> [[Category:Txn_unit:dadAX]]</div> Benedik https://ecoliwiki.org/colipedia/index.php?title=dadX:Expression&diff=308047 dadX:Expression 2007-08-09T19:02:34Z <p>Benedik: /* Notes */</p> <hr /> <div>&lt;!--<br /> ***************************************************************************************************************************************************<br /> *<br /> *<br /> * PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE,<br /> * YOU'RE PROBABLY IN THE WRONG PLACE<br /> *<br /> *<br /> ***************************************************************************************************************************************************<br /> --&gt;{{#css:Suppresslinks.css}}&lt;css&gt;{{:Suppresslinks.css}}&lt;/css&gt;<br /> &lt;noinclude&gt;{{TabsTop}}<br /> {{Tab|Quickview|dadX}}{{Tab|Gene|dadX}}{{Tab|Gene Product(s)|dadX}}{{Tab On|Expression|dadX}}{{Tab|Evolution|dadX}}{{Tab|On One Page|dadX}}{{TabsBottom}}<br /> {|<br /> |- <br /> |{{Sub}}[[#Overview|Overview]] <br /> |{{Sub}}[[#Transcription and Transcriptional Regulation|Transcription]]<br /> |{{Sub}}[[#Translation and Regulation of Translation|Translation]]<br /> |{{Sub}}[[#Turnover and Regulation of Turnover|Turnover]]<br /> |{{Sub}}[[#Experimental|Experimental]]<br /> |{{Sub}}[[#Links| Links]]<br /> |{{Sub}}[[#References| References]]<br /> |{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]<br /> |}<br /> &lt;/noinclude&gt;<br /> ==Overview==<br /> {{Expression_overview_placeholder}}<br /> ==Transcription and Transcriptional Regulation==<br /> {{BacktoTop}}<br /> &lt;protect&gt;<br /> {|{{Prettytable}}<br /> |-<br /> |&lt;!--box uid=421aa90e079fa326b6494f812ad13e79.35559.L46ab4cb7a5212--&gt;<br /> &lt;!--<br /> ******************************************************************************************<br /> *<br /> * ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. **<br /> *<br /> ****************************************************************************************** --&gt;<br /> {|class = 'sortable' {{Prettytable}} id='190833' <br /> |- {{table heading style}}<br /> !Transcription unit(s)<br /> |-<br /> |<br /> [[:Category:Txn_unit:dadAX|dadAX]] <br /> |-class='sortbottom'<br /> |[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&amp;id=421aa90e079fa326b6494f812ad13e79.35559.L46ab4cb7a5212&amp;page=35559&amp;pagename={{FULLPAGENAMEE}} edit table]<br /> |}<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.35559.L46ab4cb7a5212--&gt;||{{RegulonDBfig|ECK120001374.jpg|DADX}}<br /> |}<br /> {{expression_transcription_help}}<br /> &lt;!--Transcription_notes--&gt;&lt;/protect&gt;<br /> ===Notes===<br /> Transcription induced by L-alanine.<br /> <br /> ==Translation and Regulation of Translation==<br /> {{BacktoTop}}<br /> &lt;protect&gt;{{GBrowseFigureByCoord|1238082|1238122|ecoli|MG1655|Genes_unlabeled+DNA_unlabeled|400|{{Nterm_closeup}} }}<br /> &lt;!--Translation_notes--&gt;&lt;/protect&gt;<br /> ===Notes===<br /> {{Expression_translation_placeholder}}<br /> <br /> ==Turnover and Regulation of Turnover==<br /> &lt;!--Turnover_notes--&gt;&lt;/protect&gt;<br /> <br /> ===Notes===<br /> {{Expression_turnover_placeholder}}<br /> <br /> ==Experimental==<br /> {{BacktoTop}}<br /> &lt;protect&gt;<br /> &lt;big&gt;'''Mutations Affecting Expression'''&lt;/big&gt;<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.35559.B46ab4cb86e8fa--&gt;<br /> &lt;!--<br /> ******************************************************************************************<br /> *<br /> * ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. **<br /> *<br /> ****************************************************************************************** --&gt;<br /> {|class = 'sortable' {{Prettytable}} id='190834' <br /> |- {{table_heading_style}}<br /> !Allele Name!!Mutation!!Phenotype!!Reference<br /> |-class='sortbottom'<br /> |[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&amp;id=421aa90e079fa326b6494f812ad13e79.35559.B46ab4cb86e8fa&amp;page=35559&amp;pagename={{FULLPAGENAMEE}} edit table] || || ||<br /> |}<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.35559.B46ab4cb86e8fa--&gt;<br /> {{Expression_allele_table_help}}<br /> <br /> &lt;big&gt;'''Expression Studies'''&lt;/big&gt;<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.35559.A46ab4cb8d8f1d--&gt;<br /> &lt;!--<br /> ******************************************************************************************<br /> *<br /> * ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. **<br /> *<br /> ****************************************************************************************** --&gt;<br /> {|class = 'sortable' {{Prettytable}} id='190835' <br /> |- {{table heading style}}<br /> !Type!!Reference!!Notes<br /> |-<br /> |<br /> microarray <br /> |<br /> [http://chase.ou.edu/macro/searchlink.php?bnum=b1190 EcoliGenExpDB:b1190] ([[EcoliGenExpDB|EcoliWiki Page]]) <br /> |<br /> Summary of data for dadX from multiple microarray studies <br /> |-class='sortbottom'<br /> |[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&amp;id=421aa90e079fa326b6494f812ad13e79.35559.A46ab4cb8d8f1d&amp;page=35559&amp;pagename={{FULLPAGENAMEE}} edit table] || ||<br /> |}<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.35559.A46ab4cb8d8f1d--&gt;<br /> {{Expression_studies_table_help}}<br /> <br /> &lt;big&gt;'''Expression Resources'''&lt;/big&gt;<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.35559.E46ab4cb94f22f--&gt;<br /> &lt;!--<br /> ******************************************************************************************<br /> *<br /> * ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. **<br /> *<br /> ****************************************************************************************** --&gt;<br /> {|class = 'sortable' {{Prettytable}} id='190836' <br /> |- {{table heading style}}<br /> !Resource Name!!Resource Type!!Description!!Source!!Notes<br /> |-class='sortbottom'<br /> |[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&amp;id=421aa90e079fa326b6494f812ad13e79.35559.E46ab4cb94f22f&amp;page=35559&amp;pagename={{FULLPAGENAMEE}} edit table] || || || ||<br /> |}<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.35559.E46ab4cb94f22f--&gt;<br /> {{Expression_resource_table_help}}<br /> &lt;protect&gt;&lt;!--Expression_experimental_notes--&gt;&lt;/protect&gt;<br /> ===Notes===<br /> <br /> <br /> ==Accessions Related to ''dadX'' Expression==<br /> {{BacktoTop}}<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.35559.T46ab4cb9ba597--&gt;<br /> &lt;!--<br /> ******************************************************************************************<br /> *<br /> * ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. **<br /> *<br /> ****************************************************************************************** --&gt;<br /> {|class = 'sortable' {{Prettytable}} id='190837' <br /> |- {{table_heading_style}}<br /> !Database!!Accession!!Notes<br /> |-<br /> |<br /> [http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]]) <br /> |<br /> [http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&amp;object=EG11408 EcoCyc:EG11408] <br /> |<br /> <br /> |-<br /> |<br /> [http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]]) <br /> |<br /> [http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB1380 EchoBASE:EB1380] <br /> |<br /> <br /> |-<br /> |<br /> [http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]]) <br /> |<br /> [http://chase.ou.edu/macro/searchlink.php?bnum=b1190 EcoliGenExpDB:b1190] <br /> |<br /> <br /> |-<br /> |<br /> [http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]]) <br /> |<br /> [http://ecogene.org/geneinfo.php?eg_id=EG11408 EcoGene:EG11408] <br /> |<br /> <br /> |-class='sortbottom'<br /> |[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&amp;id=421aa90e079fa326b6494f812ad13e79.35559.T46ab4cb9ba597&amp;page=35559&amp;pagename={{FULLPAGENAMEE}} edit table] || ||<br /> |}<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.35559.T46ab4cb9ba597--&gt;<br /> {{Expression_accessions_table_help}}<br /> &lt;protect&gt;&lt;!--Accessions_notes--&gt;&lt;/protect&gt;<br /> ===Notes===<br /> <br /> <br /> ==Links==<br /> {{BacktoTop}}<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.35559.G46a7b4fc70ac9--&gt;<br /> &lt;!--<br /> ******************************************************************************************<br /> *<br /> * ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. **<br /> *<br /> ****************************************************************************************** --&gt;<br /> {|class = 'sortable' {{Prettytable}} id='102285' <br /> |- {{table_heading_style}}<br /> !Name!!URL!!Comments<br /> |-class='sortbottom'<br /> |[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&amp;id=421aa90e079fa326b6494f812ad13e79.35559.G46a7b4fc70ac9&amp;page=35559&amp;pagename={{FULLPAGENAMEE}} edit table] || ||<br /> |}<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.35559.G46a7b4fc70ac9--&gt;<br /> {{Links_help}}<br /> &lt;noinclude&gt;<br /> ==References==<br /> {{BacktoTop}}<br /> {{RefHelp}}<br /> &lt;references/&gt;<br /> __NOTOC__<br /> &lt;/noinclude&gt;<br /> ===Categories===<br /> {{BacktoTop}}<br /> [[Category:Txn_unit:dadAX]]</div> Benedik https://ecoliwiki.org/colipedia/index.php?title=alr:Gene&diff=308044 alr:Gene 2007-08-09T18:50:46Z <p>Benedik: edited by Benedik via TableEdit</p> <hr /> <div>&lt;!--<br /> ***************************************************************************************************************************************************<br /> *<br /> * PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE,<br /> * YOU'RE PROBABLY IN THE WRONG PLACE<br /> *<br /> *<br /> ***************************************************************************************************************************************************<br /> --&gt;{{#css:Suppresslinks.css}}&lt;css&gt;{{:Suppresslinks.css}}&lt;/css&gt;<br /> &lt;noinclude&gt;{{TabsTop}} <br /> {{Tab|Quickview|alr}}{{Tab On|Gene|alr}}{{Tab|Gene Product(s)|alr}}{{Tab|Expression|alr}}{{Tab|Evolution|alr}}{{Tab|On One Page|alr}}{{TabsBottom}}<br /> {|<br /> |- style=&quot;background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;&quot; <br /> |{{Sub}}[[#Nomenclature |Nomenclature]]<br /> |{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]<br /> |{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]<br /> |{{Sub}}[[#Genetic Resources |Genetic Resources]]<br /> |{{Sub}}[[#Accessions in Other Databases |Accessions]]<br /> |{{Sub}}[[#Links |Links]]<br /> |{{Sub}}[[#References |References]]<br /> |{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]<br /> |}<br /> &lt;/noinclude&gt;&lt;protect&gt;<br /> ==Nomenclature==<br /> {{BacktoTop}}<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.18665.W46aa05cc59838--&gt;<br /> &lt;!--<br /> ******************************************************************************************<br /> *<br /> * ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. **<br /> *<br /> ****************************************************************************************** --&gt;<br /> {|{{Prettytable}}<br /> |-<br /> !{{table_heading_style}} |Standard name<br /> |<br /> ''alr'' <br /> |-<br /> !{{table_heading_style}} |Mnemonic<br /> |<br /> <br /> |-<br /> !{{table_heading_style}} |Synonyms<br /> |<br /> ''ECK4045, b4053, JW4013, alr5''&lt;ref name='LIB:Riley_2006'/&gt;<br /> |-<br /> |colspan='2'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&amp;id=421aa90e079fa326b6494f812ad13e79.18665.W46aa05cc59838&amp;page=18665&amp;pagename={{FULLPAGENAMEE}} edit table]<br /> |}<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.18665.W46aa05cc59838--&gt;<br /> {{Gene_nomenclature_help}}<br /> &lt;!--Nomenclature_notes--&gt;&lt;/protect&gt;<br /> ===Notes===<br /> <br /> <br /> ==Location(s) and DNA Sequence==<br /> {{BacktoTop}}<br /> &lt;protect&gt;<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.18665.L46aa05ccdd5d5--&gt;<br /> &lt;!--<br /> ******************************************************************************************<br /> *<br /> * ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. **<br /> *<br /> ****************************************************************************************** --&gt;<br /> {|class = 'sortable' {{Prettytable}} id='149206' <br /> |- {{table_heading_style}}<br /> !Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links<br /> |-<br /> |<br /> MG1655<br /> |<br /> 91.9 minutes&amp;nbsp;<br /> |<br /> MG1655: 4263805..4264884&lt;br /&gt;{{GBrowseFigureByCoord|4262805|4265884|ecoli|MG1655}} <br /> |<br /> *[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&amp;chromosome=COLI-K12&amp;object=EG10001 EcoCyc]<br /> *[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli/?q=MG1655:4262805..4265884 GBrowse(MG1655)]<br /> <br /> |<br /> *[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli/?plugin=FastaDumper&amp;name=MG1655:4263805..4264884&amp;plugin_action=Go FASTA Dump]<br /> *[http://biocyc.org/ECOLI/sequence?object=EG10001 EcoCyc Sequence Dump] <br /> |-<br /> |<br /> W3110<br /> |<br /> &amp;nbsp;<br /> |<br /> W3110: 4269372..4270451&lt;br /&gt;{{GBrowseFigureByCoord|4268372|4271451|ecoli_W3110|W3110}} <br /> |<br /> *[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?q=W3110:4268372..4271451 GBrowse(W3110)] <br /> |<br /> *[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?plugin=FastaDumper&amp;name=W3110:4269372..4270451&amp;plugin_action=Go FASTA Dump] <br /> |-class='sortbottom'<br /> |[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&amp;id=421aa90e079fa326b6494f812ad13e79.18665.L46aa05ccdd5d5&amp;page=18665&amp;pagename={{FULLPAGENAMEE}} edit table] || || || ||<br /> |}<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.18665.L46aa05ccdd5d5--&gt;<br /> {{Gene_location_help}}<br /> &lt;!--Location_notes--&gt;&lt;/protect&gt;<br /> ===Notes===<br /> <br /> <br /> ==Sequence Features==<br /> {{BacktoTop}}<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.18665.N46aa05cda4cc3--&gt;<br /> &lt;!--<br /> ******************************************************************************************<br /> *<br /> * ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. **<br /> *<br /> ****************************************************************************************** --&gt;<br /> {|class = 'sortable' {{Prettytable}} id='149207' <br /> |- {{table_heading_style}}<br /> !Feature type!!Location!!Description<br /> |-class='sortbottom'<br /> |[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&amp;id=421aa90e079fa326b6494f812ad13e79.18665.N46aa05cda4cc3&amp;page=18665&amp;pagename={{FULLPAGENAMEE}} edit table] || ||<br /> |}<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.18665.N46aa05cda4cc3--&gt;<br /> {{Gene_sequence_features_help}}<br /> &lt;protect&gt;&lt;!--Sequence_notes--&gt;&lt;/protect&gt;<br /> ====Notes====<br /> <br /> <br /> ==Alleles and Phenotypes==<br /> {{BacktoTop}}<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.18665.D46aa05cdefdbb--&gt;<br /> &lt;!--<br /> ******************************************************************************************<br /> *<br /> * ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. **<br /> *<br /> ****************************************************************************************** --&gt;<br /> {|class = 'sortable' {{Prettytable}} id='149208' <br /> |- {{table_heading_style}}<br /> !Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments<br /> |-<br /> |<br /> Δalr (Keio:JW4013)<br /> |<br /> deletion<br /> |<br /> deletion<br /> |<br /> <br /> |<br /> No phenotype to Δalr except in a ΔdadX background. Double mutant requires D-alanine for growth. <br /> |<br /> [[PMID:16738554]]&lt;ref name=PMID:16738554/&gt;<br /> |<br /> [http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]<br /> |<br /> <br /> |-class='sortbottom'<br /> |[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&amp;id=421aa90e079fa326b6494f812ad13e79.18665.D46aa05cdefdbb&amp;page=18665&amp;pagename={{FULLPAGENAMEE}} edit table] || || || || || || ||<br /> |}<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.18665.D46aa05cdefdbb--&gt;<br /> {{Gene_alleles_help}}<br /> &lt;protect&gt;&lt;!--Alleles_notes--&gt;&lt;/protect&gt;<br /> ===Notes===<br /> <br /> <br /> ==Genetic Resources==<br /> {{BacktoTop}}<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.18665.S46aa05ceb6810--&gt;<br /> &lt;!--<br /> ******************************************************************************************<br /> *<br /> * ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. **<br /> *<br /> ****************************************************************************************** --&gt;<br /> {|class = 'sortable' {{Prettytable}} id='149209' <br /> |- {{table_heading_style}}<br /> !Resource!!Resource Type!!Source!!Notes/Reference<br /> |-<br /> |<br /> JW4013<br /> |<br /> Plasmid clone<br /> |<br /> [http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]<br /> |<br /> [[PMID:16769691]]&lt;ref name=PMID:16769691/&gt;<br /> <br /> Status:Clone OK<br /> <br /> Primer 1:GCCCAAGCGGCAACTGTTGTGAT<br /> <br /> Primer 2:CCATCCACGTATTTCATCGCGAC <br /> |-<br /> |<br /> [[malF:Gene|malF3089::Tn10]]<br /> |<br /> Linked marker<br /> |<br /> CAG12164 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40371 CGSC7476]&lt;ref name='LIB:cgsc'/&gt;<br /> |<br /> est. P1 cotransduction: 42% &lt;ref name='LIB:Nichols_linked_Tn'/&gt; <br /> |-<br /> |<br /> [[yjcS:Gene|zje-2241::Tn10]]<br /> |<br /> Linked marker<br /> |<br /> CAG18427 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40603 CGSC7481]&lt;ref name='LIB:cgsc'/&gt;<br /> |<br /> est. P1 cotransduction: 17% &lt;ref name='LIB:Nichols_linked_Tn'/&gt; <br /> |-class='sortbottom'<br /> |[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&amp;id=421aa90e079fa326b6494f812ad13e79.18665.S46aa05ceb6810&amp;page=18665&amp;pagename={{FULLPAGENAMEE}} edit table] || || ||<br /> |}<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.18665.S46aa05ceb6810--&gt;<br /> {{Gene_resources_help}}<br /> &lt;protect&gt;&lt;!--Gene_resources_notes--&gt;&lt;/protect&gt;<br /> ===Notes===<br /> <br /> <br /> ==Accessions in Other Databases==<br /> {{BacktoTop}}<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.18665.E46aa05cf63c7f--&gt;<br /> &lt;!--<br /> ******************************************************************************************<br /> *<br /> * ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. **<br /> *<br /> ****************************************************************************************** --&gt;<br /> {|class = 'sortable' {{Prettytable}} id='149210' <br /> |- {{table_heading_style}}<br /> !Database!!Accession!!Notes<br /> |-<br /> |<br /> [http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]]) <br /> |<br /> [http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&amp;object=EG10001 EcoCyc:EG10001] <br /> |<br /> <br /> |-<br /> |<br /> [http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]]) <br /> |<br /> [http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB0001 EchoBASE:EB0001] <br /> |<br /> <br /> |-<br /> |<br /> [http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]]) <br /> |<br /> [http://chase.ou.edu/macro/searchlink.php?bnum=b4053 EcoliGenExpDB:b4053] <br /> |<br /> <br /> |-<br /> |<br /> [http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]]) <br /> |<br /> [http://BioCyc.org/ECOL199310/new-image?object=C5028 ECOL199310CYC:C5028] <br /> |<br /> <br /> |-<br /> |<br /> [http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]]) <br /> |<br /> [http://ecogene.org/geneinfo.php?eg_id=EG10001 EcoGene:EG10001] <br /> |<br /> <br /> |-<br /> |<br /> [http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]]) <br /> |<br /> [http://BioCyc.org/ECOO157/new-image?object=ALR ECOO157CYC:ALR] <br /> |<br /> <br /> |-<br /> |<br /> [http://cgsc.biology.yale.edu CGSC] ([[CGSC|EcoliWiki Page]]) <br /> |<br /> [http://cgsc.biology.yale.edu/cgi-bin/sybgw/cgsc/Site/1034 CGSC:1034] <br /> |<br /> <br /> |-class='sortbottom'<br /> |[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&amp;id=421aa90e079fa326b6494f812ad13e79.18665.E46aa05cf63c7f&amp;page=18665&amp;pagename={{FULLPAGENAMEE}} edit table] || ||<br /> |}<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.18665.E46aa05cf63c7f--&gt;<br /> {{Gene_accessions_help}}<br /> &lt;protect&gt;&lt;!--Gene_accessions_notes--&gt;&lt;/protect&gt;<br /> ===Notes===<br /> <br /> <br /> ==Links==<br /> {{BacktoTop}}<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.18665.G46a71f0934481--&gt;<br /> &lt;!--<br /> ******************************************************************************************<br /> *<br /> * ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. **<br /> *<br /> ****************************************************************************************** --&gt;<br /> {|class = 'sortable' {{Prettytable}} id='100152' <br /> |- {{table_heading_style}}<br /> !Name!!URL!!Comments<br /> |-class='sortbottom'<br /> |[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&amp;id=421aa90e079fa326b6494f812ad13e79.18665.G46a71f0934481&amp;page=18665&amp;pagename={{FULLPAGENAMEE}} edit table] || ||<br /> |}<br /> &lt;!--box uid=421aa90e079fa326b6494f812ad13e79.18665.G46a71f0934481--&gt;<br /> {{Links_help}}<br /> <br /> &lt;noinclude&gt;&lt;protect&gt;<br /> ==References==<br /> {{BacktoTop}}<br /> {{RefHelp}}<br /> &lt;references/&gt;<br /> __NOTOC__<br /> &lt;/protect&gt;&lt;/noinclude&gt;<br /> ===Categories===<br /> [[Category:Gene List:MG1655]]<br /> [[Category:Gene List:W3110]]<br /> [[Category:Genes in the Keio knockout collection]]<br /> [[Category:Genes in the ASKA clone collection]]</div> Benedik