EcoliWiki - User contributions [en]

User:Ball

2010-07-28T23:53:29Z

Ball: /* Research Interests */

==Catherine A. Ball==

*Department of Biochemistry
*Stanford University School of Medicine
*Stanford, CA 94305-5307
*USA

*e-mail: ball@genome.stanford.edu

==Research Interests==
[[Image:ball.jpg |100px]]
Dr. Ball (PhD, UCLA, 1992) is a Senior Research Associate in the Biochemistry Department of Stanford University School of Medicine. The director of the [http://smd.stanford.edu/ Stanford Microarray Database], Dr. Ball’s research interests include analysis, integration and modeling of large-scale biological data. Dr. Ball participates in two collaborative projects to provide model organism databases for ''M. tuberculosis'' [http://www.tbdb.org (TBDB)] and ''E. coli'' [http://www.ecolihub.org (EcoliHub)]. As a member and former president of the [http://www.mged.org MGED Society], Dr. Ball has been closely involved in establishing data standards and ontologies that can be used to annotate and to exchange gene expression data derived from microarrays. Her research projects include evaluating and addressing researcher needs for meeting minimal data sharing standards.

==Key Words==
*bioinformatics
*functional genomics
*biological databases
*ontologies
*gene expression

==Relevant Publications==

*[http://www.ncbi.nlm.nih.gov/pubmed/20488753 Galagan JE, Sisk P, Stolte C, Weiner B, Koehrsen M, Wymore F, Reddy TB, Zucker JD, Engels R, Gellesch M, Hubble J, Jin H, Larson L, Mao M, Nitzberg M, White J, Zachariah ZK, Sherlock G, Ball CA, Schoolnik GK. 2010. TB database 2010: Overview and update. Tuberculosis (Edinb). 2010 Jul;90(4):225-235. PMID: 20488753]

*[http://www.ncbi.nlm.nih.gov/pubmed/19174838 Ioannidis JP, Allison DB, Ball CA, Coulibaly I, Cui X, Culhane AC, Falchi M, Furlanello C, Game L, Jurman G, Mangion J, Mehta T, Nitzberg M, Page GP, Petretto E, van Noort V. 2009. Repeatability of published microarray gene expression analyses. Nat Genet. 2009 Feb;41(2):149-55. PMID: 19174838]

*[http://www.ncbi.nlm.nih.gov/pubmed/18835847 Hubble J, Demeter J, Jin H, Mao M, Nitzberg M, Reddy TB, Wymore F, Zachariah ZK, Sherlock G, Ball CA. 2009. Implementation of GenePattern within the Stanford Microarray Database. Nucleic Acids Res. 2009 Jan;37(Database issue):D898-901. PMID: 18953035]

*[http://www.ncbi.nlm.nih.gov/pubmed/18835847 Reddy TB, Riley R, Wymore F, Montgomery P, DeCaprio D, Engels R, Gellesch M, Hubble J, Jen D, Jin H, Koehrsen M, Larson L, Mao M, Nitzberg M, Sisk P, Stolte C, Weiner B, White J, Zachariah ZK, Sherlock G, Galagan JE, Ball CA, Schoolnik GK. 2008. TB database: an integrated platform for tuberculosis research. Nucleic Acids Res. 2009 Jan;37(Database issue):D499-508. PMID: 18835847]

==References==
{{RefHelp}}
<references/>

User:Ball

2010-07-28T23:52:19Z

Ball: /* Key Words */

==Catherine A. Ball==

*Department of Biochemistry
*Stanford University School of Medicine
*Stanford, CA 94305-5307
*USA

*e-mail: ball@genome.stanford.edu

==Research Interests==
[[Image:ball.jpg |100px]]
Dr. Ball (PhD, UCLA, 1992) is a Senior Research Associate in the Biochemistry Department of Stanford University School of Medicine. The director of the [http://smd.stanford.edu/ Stanford Microarray Database], Dr. Ball’s research interests include analysis, integration and modeling of large-scale biological data. Dr. Ball participates in two collaborative projects to provide model organism databases for ''M. tuberculosis'' [http://www.tbdb.org TBDB] and ''E. coli'' [http://www.ecolihub.org EcoliHub]. As a member and former president of the [http://www.mged.org MGED Society], Dr. Ball has been closely involved in establishing data standards and ontologies that can be used to annotate and to exchange gene expression data derived from microarrays. Her research projects include evaluating and addressing researcher needs for meeting minimal data sharing standards.

==Key Words==
*bioinformatics
*functional genomics
*biological databases
*ontologies
*gene expression

==Relevant Publications==

*[http://www.ncbi.nlm.nih.gov/pubmed/20488753 Galagan JE, Sisk P, Stolte C, Weiner B, Koehrsen M, Wymore F, Reddy TB, Zucker JD, Engels R, Gellesch M, Hubble J, Jin H, Larson L, Mao M, Nitzberg M, White J, Zachariah ZK, Sherlock G, Ball CA, Schoolnik GK. 2010. TB database 2010: Overview and update. Tuberculosis (Edinb). 2010 Jul;90(4):225-235. PMID: 20488753]

*[http://www.ncbi.nlm.nih.gov/pubmed/19174838 Ioannidis JP, Allison DB, Ball CA, Coulibaly I, Cui X, Culhane AC, Falchi M, Furlanello C, Game L, Jurman G, Mangion J, Mehta T, Nitzberg M, Page GP, Petretto E, van Noort V. 2009. Repeatability of published microarray gene expression analyses. Nat Genet. 2009 Feb;41(2):149-55. PMID: 19174838]

*[http://www.ncbi.nlm.nih.gov/pubmed/18835847 Hubble J, Demeter J, Jin H, Mao M, Nitzberg M, Reddy TB, Wymore F, Zachariah ZK, Sherlock G, Ball CA. 2009. Implementation of GenePattern within the Stanford Microarray Database. Nucleic Acids Res. 2009 Jan;37(Database issue):D898-901. PMID: 18953035]

*[http://www.ncbi.nlm.nih.gov/pubmed/18835847 Reddy TB, Riley R, Wymore F, Montgomery P, DeCaprio D, Engels R, Gellesch M, Hubble J, Jen D, Jin H, Koehrsen M, Larson L, Mao M, Nitzberg M, Sisk P, Stolte C, Weiner B, White J, Zachariah ZK, Sherlock G, Galagan JE, Ball CA, Schoolnik GK. 2008. TB database: an integrated platform for tuberculosis research. Nucleic Acids Res. 2009 Jan;37(Database issue):D499-508. PMID: 18835847]

==References==
{{RefHelp}}
<references/>

User:Ball

2010-07-28T23:38:18Z

Ball: /* Key Words */

User:Ball

2010-07-28T23:36:57Z

Ball: Table edited by Ball via TableEdit

==Catherine A. Ball==

*Department of Biochemistry
*Stanford University School of Medicine
*Stanford, CA 94305-5307
*USA

*e-mail: ball@genome.stanford.edu

==Research Interests==
[[Image:ball.jpg |100px]]
Dr. Ball (PhD, UCLA, 1992) is a Senior Research Associate in the Biochemistry Department of Stanford University School of Medicine. The director of the [http://smd.stanford.edu/ Stanford Microarray Database], Dr. Ball’s research interests include analysis, integration and modeling of large-scale biological data. Dr. Ball participates in two collaborative projects to provide model organism databases for ''M. tuberculosis'' [http://www.tbdb.org TBDB] and ''E. coli'' [http://www.ecolihub.org EcoliHub]. As a member and former president of the [http://www.mged.org MGED Society], Dr. Ball has been closely involved in establishing data standards and ontologies that can be used to annotate and to exchange gene expression data derived from microarrays. Her research projects include evaluating and addressing researcher needs for meeting minimal data sharing standards.

==Key Words==
*bioinformatics
*functional genomics
*biological databases
*ontologies
*gene expression



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|-
!|Name (Last, FIrst)!!Organization!!Interests

|- class="tableEdit_footer"
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|}


==References==
{{RefHelp}}
<references/>

User:Ball

2010-07-28T23:36:41Z

Ball:

==Catherine A. Ball==

*Department of Biochemistry
*Stanford University School of Medicine
*Stanford, CA 94305-5307
*USA

*e-mail: ball@genome.stanford.edu

==Research Interests==
[[Image:ball.jpg |100px]]
Dr. Ball (PhD, UCLA, 1992) is a Senior Research Associate in the Biochemistry Department of Stanford University School of Medicine. The director of the [http://smd.stanford.edu/ Stanford Microarray Database], Dr. Ball’s research interests include analysis, integration and modeling of large-scale biological data. Dr. Ball participates in two collaborative projects to provide model organism databases for ''M. tuberculosis'' [http://www.tbdb.org TBDB] and ''E. coli'' [http://www.ecolihub.org EcoliHub]. As a member and former president of the [http://www.mged.org MGED Society], Dr. Ball has been closely involved in establishing data standards and ontologies that can be used to annotate and to exchange gene expression data derived from microarrays. Her research projects include evaluating and addressing researcher needs for meeting minimal data sharing standards.

==Key Words==
*bioinformatics
*functional genomics
*biological databases
*ontologies
*gene expression



{| id="M4c34e7ac2e32f" class=" tableEdit User_info_table"
|-
!|Name (Last, FIrst)!!Organization!!Interests
|-
|
Ball, Catherine
|
Stanford University School of Medicine
|
Bioinformatics, functional genomics, biological databases, ontologies

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.172363.M4c34e7ac2e32f&page=172363&pagename={{FULLPAGENAMEE}}&type=0&template=User_info_table edit table] || ||
|}


==References==
{{RefHelp}}
<references/>

File:ball.jpg

2010-07-28T23:25:25Z

Ball:

User:Ball

2010-07-28T22:57:19Z

Ball:

{| id="M4c34e7ac2e32f" class=" tableEdit User_info_table"
|-
!|Name (Last, FIrst)!!Organization!!Interests
|-
|
Ball, Catherine
|
Stanford University School of Medicine
|
Bioinformatics, functional genomics, biological databases, ontologies

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.172363.M4c34e7ac2e32f&page=172363&pagename={{FULLPAGENAMEE}}&type=0&template=User_info_table edit table] || ||
|}


==References==
{{RefHelp}}
<references/>

==Research Interests==

dog and pony shows

User:Ball

2010-07-28T22:52:53Z

Ball: Table edited by Ball via TableEdit

User:Ball

2010-07-28T22:50:52Z

Ball: Table edited by Ball via TableEdit

{| id="M4c34e7ac2e32f" class=" tableEdit User_info_table"
|-
!|Name (Last, FIrst)!!Organization!!Interests
|-
|
Ball, Catherine
|
Stanford University School of Medicine
|
Bioinformatics, functional genomics, biological databases, ontologies
|-
|
this is me testing
|

|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.172363.M4c34e7ac2e32f&page=172363&pagename={{FULLPAGENAMEE}}&type=0&template=User_info_table edit table] || ||
|}


==References==
{{RefHelp}}
<references/>

User:Ball

2010-07-07T20:48:29Z

Ball: Table edited by Ball via TableEdit

User:Ball

2010-07-07T20:46:36Z

Ball: Fill User: Page!

{| id="M4c34e7ac2e32f" class=" tableEdit User_info_table"
|-
!|Name (Last, FIrst)!!Organization!!Interests
|-
|
Ball, Catherine
|
Stanford University
|

|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.172363.M4c34e7ac2e32f&page=172363&pagename={{FULLPAGENAMEE}}&type=0&template=User_info_table edit table] || ||
|}


==References==
{{RefHelp}}
<references/>

User:Ball

2010-07-07T20:46:35Z

Ball: New User: Page!