CGD

2007-11-07T21:58:58Z

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lexA:Gene

2007-11-07T21:41:57Z

Amcbride: edited by Amcbride via TableEdit

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<noinclude>{{TabsTop}}
{{Tab|Quickview|lexA}}{{Tab On|Gene|lexA}}{{Tab|Gene Product(s)|lexA}}{{Tab|Expression|lexA}}{{Tab|Evolution|lexA}}{{Tab|On One Page|lexA}}{{TabsBottom}}
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Resources |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References |References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude><protect>
==Nomenclature==
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{|{{Prettytable}}
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!{{table_heading_style}} |Standard name
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''lexA''
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!{{table_heading_style}} |Mnemonic
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!{{table_heading_style}} |Synonyms
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''ECK4035, b4043, JW4003, exrA, tsl, umuA''<ref name='LIB:Riley_2006'/>
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|colspan='2'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.18645.F46aa058a7e25a&page=18645&pagename={{FULLPAGENAMEE}} edit table]
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{{Gene_nomenclature_help}}
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===Notes===

==Location(s) and DNA Sequence==
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{|class = 'sortable' {{Prettytable}} id='149146'
|- {{table_heading_style}}
!Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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MG1655
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91.71 minutes 
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MG1655: 4255138..4255746<br />{{GBrowseFigureByCoord|4254138|4256746|ecoli|MG1655}}
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*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10533 EcoCyc]
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli/?q=MG1655:4254138..4256746 GBrowse(MG1655)]

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*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli/?plugin=FastaDumper&name=MG1655:4255138..4255746&plugin_action=Go FASTA Dump]
*[http://biocyc.org/ECOLI/sequence?object=EG10533 EcoCyc Sequence Dump]
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W3110
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W3110: 4260705..4261313<br />{{GBrowseFigureByCoord|4259705|4262313|ecoli_W3110|W3110}}
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*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?q=W3110:4259705..4262313 GBrowse(W3110)]
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*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?plugin=FastaDumper&name=W3110:4260705..4261313&plugin_action=Go FASTA Dump]
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{{Gene_location_help}}
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===Notes===

==Sequence Features==
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{|class = 'sortable' {{Prettytable}} id='149147'
|- {{table_heading_style}}
!Feature type!!Location!!Description
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.18645.L46aa058bc99aa&page=18645&pagename={{FULLPAGENAMEE}} edit table] || ||
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{{Gene_sequence_features_help}}
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====Notes====

==Alleles and Phenotypes==
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{|class = 'sortable' {{Prettytable}} id='149148'
|- {{table_heading_style}}
!Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
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lexA?
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uninducible, not cleaved during SOS response
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===Notes===

==Genetic Resources==
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{|class = 'sortable' {{Prettytable}} id='149149'
|- {{table_heading_style}}
!Resource!!Resource Type!!Source!!Notes/Reference
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JW4003
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Plasmid clone
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[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
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[[PMID:16769691]]<ref name=PMID:16769691/>

Status:Clone OK

Primer 1:GCCAAAGCGTTAACGGCCAGGCA

Primer 2:CCaAGCCAGTCGCCGTTGCGAAT
|-
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[[malF:Gene|malF3089::Tn10]]
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Linked marker
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CAG12164 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40371 CGSC7476]<ref name='LIB:cgsc'/>
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est. P1 cotransduction: 60% <ref name='LIB:Nichols_linked_Tn'/>
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[[yjcS:Gene|zje-2241::Tn10]]
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Linked marker
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CAG18427 = [http://cgsc2.biology.yale.edu/Strain.php?ID=40603 CGSC7481]<ref name='LIB:cgsc'/>
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est. P1 cotransduction: 9% <ref name='LIB:Nichols_linked_Tn'/>
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{{Gene_resources_help}}
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===Notes===

==Accessions in Other Databases==
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{|class = 'sortable' {{Prettytable}} id='149150'
|- {{table_heading_style}}
!Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10533 EcoCyc:EG10533]
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|-
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[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
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[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB0528 EchoBASE:EB0528]
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|-
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[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
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[http://chase.ou.edu/macro/searchlink.php?bnum=b4043 EcoliGenExpDB:b4043]
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|-
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[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])
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[http://BioCyc.org/ECOL199310/new-image?object=C5014 ECOL199310CYC:C5014]
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[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
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[http://ecogene.org/geneinfo.php?eg_id=EG10533 EcoGene:EG10533]
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|-
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[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
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[http://BioCyc.org/ECOO157/new-image?object=LEXA ECOO157CYC:LEXA]
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|-
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[http://cgsc.biology.yale.edu CGSC] ([[CGSC|EcoliWiki Page]])
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[http://cgsc.biology.yale.edu/cgi-bin/sybgw/cgsc/Site/558 CGSC:558]
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{{Gene_accessions_help}}
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===Notes===

==Links==
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!Name!!URL!!Comments
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{{Links_help}}

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==References==
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{{RefHelp}}
<references/>
__NOTOC__
</protect></noinclude>
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Genes not in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]

EcoliWiki - User contributions [en]

CGD

lexA:Gene