EcoliWiki - User contributions [en]

talB:Evolution

2010-03-03T13:10:41Z

Aksamland: /* Notes */

talB:Gene

2010-03-03T13:02:21Z

Aksamland: Table edited by Aksamland via TableEdit

talB:Gene Product(s)

2010-03-03T12:58:00Z

Aksamland: Table edited by Aksamland via TableEdit

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<noinclude>{{TabsTop}}
{{Tab|Quickview|talB}}{{Tab|Gene|talB}}{{Tab On|Gene Product(s)|talB}}{{Tab|Expression|talB}}{{Tab|Evolution|talB}}{{Tab|On One Page|talB}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==

{{Product_nomenclature_help}}
{| id="D46aa14e206d54" class=" tableEdit Product_nomenclature_table"

|-
!align=left {{table heading style}} |Standard name
||
TalB
|-
!align=left {{table heading style}} |Synonyms
||
transaldolase B<ref name='LIB:Riley_2006'/>, B0008<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YaaK<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TalB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!align=left {{table heading style}} |Product description
||
transaldolase B<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;

Component of [[:Category:Complex:transaldolase B|transaldolase B]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>

Transaldolase B<ref name='LIB:EcoGene'/>
|-
!align=left {{table heading style}} |EC number (for enzymes)
||
* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.2.1.2 2.2.1.2]<ref name='LIB:Riley_2006'/>

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|}


<protect></protect>
===Notes===

==Function==
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<protect>
<big>'''Gene Ontology'''</big> 
{{Product_GO_help}}
{| {{Prettytable}} id="A46aa14e35aa5c" class=" tableEdit GO_table_product dataTable"
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0016740
|
transferase activity
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0808
|
F
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0008152
|
metabolic process
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR013785
|
P
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0006098
|
pentose-phosphate shunt
|
GO_REF:0000002 GO_REF:0000004 GO_REF:0000020
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR004730 SP_KW:KW-0570 HAMAP:MF_00492
|
P
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|

|
GO:0005975
|
carbohydrate metabolic process
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR001585
|
P
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|

|
GO:0005737
|
cytoplasm
|
GO_REF:0000002 GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR004730 SP_KW:KW-0963
|
C
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|

|
GO:0004801
|
transaldolase activity
|
GO_REF:0000002 GO_REF:0000003 GO_REF:0000020
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR004730 EC:2.2.1.2 HAMAP:MF_00492
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|

|
GO:0003824
|
catalytic activity
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR013785
|
F
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0005739
|
mitochondrion
|
PMID:16858726
|
IDA: Inferred from Direct Assay
|

|
C
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0005829
|
cytosol
|
PMID:16858726
|
IDA: Inferred from Direct Assay
|

|
C
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|

|
GO:0009052
|
pentose-phosphate shunt, non-oxidative branch
|

|

|

|
P
|
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
|
required fields missing
|-
|

|
GO:0004801
|
transaldolase activity
|
PMID:7592346
|
IDA: Inferred from Direct Assay
|

|
F
|
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
|
complete
|-
|

|
GO:0005624
|
membrane_fraction
|
PMID:16858726 
|
IDA: Inferred from Direct Assay
|

|
C
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|

|-
|

|
GO:0004801
|
transaldolase_activity
|
PMID:7592346 
|
IDA: Inferred from Direct Assay
|

|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|

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<big>'''Interactions'''</big>

{{Product_interactions_help}}
{| id="Z46aa14f220f68" class=" tableEdit Product_interactions_table dataTable"
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|
Protein
|
Subunits of [[:Category:Complex:transaldolase B|transaldolase B]]
|
could be indirect
|

|

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</protect>
===Notes===

==Localization==

{{Product_localization_help}}
{| id="T46a72adfda1c5" class=" tableEdit Product_localization_table"
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes
|-
|
Cytoplasm
|

|

|

|

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<protect></protect>

===Notes===

==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<big>'''Physical Properties'''</big>

{{Product_physical_properties_help}}
{| id="C46aa14f432a17" class=" tableEdit Product_phys_prop_table"

|-
!align=left {{table heading style}} |Sequence
||
[http://biocyc.org/ECOLI/sequence-aa?object=TRANSALDOLB-MONOMER at EcoCyc]
<pre>MTDKLTSLRQ YTTVVADTGD IAAMKLYQPQ DATTNPSLIL NAAQIPEYRK LIDDAVAWAK
QQSNDRAQQI VDATDKLAVN IGLEILKLVP GRISTEVDAR LSYDTEASIA KAKRLIKLYN
DAGISNDRIL IKLASTWQGI RAAEQLEKEG INCNLTLLFS FAQARACAEA GVFLISPFVG
RILDWYKANT DKKEYAPAED PGVVSVSEIY QYYKEHGYET VVMGASFRNI GEILELAGCD
RLTIAPALLK ELAESEGAIE RKLSYTGEVK ARPARITESE FLWQHNQDPM AVDKLAEGIR
KFAIDQEKLE KMIGDLL</pre>
|-
!align=left {{table heading style}} |Length
||
317
|-
!align=left {{table heading style}} |Mol. Wt
||
35.22 kDa
|-
!align=left {{table heading style}} |pI
||
4.9 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
39,880 - 40,255 (calc based on 12 Y, 4 W, and 3 C residues)

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<big>'''Domains/Motifs/Modification Sites'''</big><table>
<tr align="left" valign="top">
<td>
{{Product_domains_motifs_help}}
{| id="L46aa14f48a2fc" class=" tableEdit Product_motif_table dataTable"
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
|-
|
Initiator Methionine
|
1
|
Removed
|
[http://www.uniprot.org/uniprot/P0A870#section_features UniProt:P0A870]
|

|-
|
Modification Site
|
33
|
phosphorylation site at T33
|
[[PHOSIDA#p-values|probability less than 75%]]
|
PMID:17938405
|-
|
Modification Site
|
34
|
phosphorylation site at T34
|
[[PHOSIDA#p-values|probability less than 75%]]
|
PMID:17938405
|-
|
Modification Site
|
37
|
phosphorylation site at S37
|
[[PHOSIDA#p-values|probability greater than 75%]]
|
PMID:17938405
|-
|
Modification Site
|
226
|
phosphorylation site at S226
|
[[PHOSIDA#p-values|probability greater than 75%]]
|
PMID:17938405

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</td>
<td>


<motif_map/>
</td>
</tr>
</table>

<table><tr valign='top'><td>
<big>'''Structure'''</big> 

{{Product_structure_help}}
{| id="Z46aa14f4d236c" class=" tableEdit Product_structure_table"

|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=talB
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)

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</td><td></protect>
==== Structure figures ====

<protect>
</td><tr><table></protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}

{{Product_resources_help}}
{| id="I46aa14f9855a0" class=" tableEdit Product_resource_table"
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference

|- class="tableEdit_footer"
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<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}

{{Gene_accessions_help}}
{| id="U46aa14f9cdfa9" class=" tableEdit Gene_accessions_table"
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=TRANSALDOLB-MONOMER EcoCyc:TRANSALDOLB-MONOMER]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[[uniprot:P0A870|UniProt:P0A870]]
|

|-
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://www.sanger.ac.uk/family?acc=PF00923 PFAM:PF00923]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_414549 RefSeq:NP_414549]
|

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<protect></protect>
===Notes===

==Links==
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{| id="L46a72ae958b2a" class=" tableEdit Links_table"
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!|Name!!URL!!Comments

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<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references />
__NOTOC__
===Categories===
{{BacktoTop}}
[[Category:Proteins]]
[[Category:GO:0005737_!_cytoplasm]][[Category:GO:0009052_!_pentose-phosphate shunt, non-oxidative branch]][[Category:GO:0004801_!_transaldolase activity]][[Category:Complex:transaldolase B]][[Category:Products with structures in PDB]]