EcoliWiki - User contributions [en]

User talk:Aklingele

2007-08-10T16:26:17Z

Aklingele:

Audrey is a graduate student at the [http://wisc.edu University of Wisconsin Madison]. 
I'm interested in DNA repair and replication. 
[[User:Aklingele|Aklingele]] 11:22, 10 August 2007 (CDT)

User talk:Aklingele

2007-08-10T16:22:39Z

Aklingele: New page: Hello, welcome to Aklingele Talk! I'm interested in DNA repair and replication. ~~~~

Hello, welcome to Aklingele Talk! 
I'm interested in DNA repair and replication. 
[[User:Aklingele|Aklingele]] 11:22, 10 August 2007 (CDT)

recA:Gene Product(s)

2007-08-09T21:04:38Z

Aklingele: edited by Aklingele via TableEdit

{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
{{Tab|Quickview|recA}}{{Tab|Gene|recA}}{{Tab On|Gene Product(s)|recA}}{{Tab|Expression|recA}}{{Tab|Evolution|recA}}{{Tab|On One Page|recA}}{{TabsBottom}}
{|
|-
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Function |Function]]
|{{Sub}}[[#Interactions |Interactions]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Links |Links]]
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
</noinclude>
==Nomenclature==


{|{{Prettytable}}
|-
!{{table heading style}} |Standard name
|
RecA
|-
!{{table heading style}} |Synonyms
|
B2699 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Tif product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, UmuB product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Zab product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Srf product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RnmB product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RecH product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, LexB product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RecA product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
|-
!{{table heading style}} |Product description
|
DNA strand exchange and renaturation, DNA-dependent ATPase, DNA- and ATP-dependent coprotease<ref name='LIB:EcoCyc10.6'/>; DNA strand exchange and recombination protein with protease and nuclease activity<ref name='LIB:EcoCyc11.1'/>

|-
!{{table heading style}} |EC number (for enzymes)
|
** [http://www.brenda.uni-koeln.de/php/result_flat.php4?ecno=3.4.99.37 3.4.99.37]<ref name='LIB:Riley_2006'/>
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25711.O46aab7b8421b9&page=25711&pagename={{FULLPAGENAMEE}} edit table]
|}

{{Product_nomenclature_help}}
<protect></protect>
===Notes===

==Function==
{{BacktoTop}}
<protect>
<big>'''Gene Ontology'''</big>


{|class = 'sortable' {{Prettytable}} id='171245'
|- {{table_heading_style}}
!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|

|
GO:0005737
|
cytoplasm
|

|

|

|
C
|
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
|
required fields missing
|-
|

|
GO:0006310
|
DNA recombination
|

|

|

|
P
|
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
|
required fields missing
|-
|

|
GO:0006281
|
DNA repair
|

|

|

|
P
|
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
|
required fields missing
|-
|

|
GO:0006508
|
proteolysis
|

|

|

|
P
|
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
|
required fields missing
|-
|

|
GO:0009432
|
SOS response
|

|

|

|
P
|
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
|
required fields missing
|-
|

|
GO:0008233
|
peptidase activity
|

|

|

|
F
|
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
|
required fields missing
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25711.I46aab7b96871f&page=25711&pagename={{FULLPAGENAMEE}} edit table] || || || || || || || ||
|}

{{Product_GO_help}}

<big>'''Interactions'''</big>


{|class = 'sortable' {{Prettytable}} id='171246'
|- {{table heading style}}
!Partner Type!!Partner!!Notes
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25711.K46aab7eb5a263&page=25711&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Product_interactions_help}}
</protect>
===Notes===

==Localization==


{|class = 'sortable' {{Prettytable}} id='171247'
|- {{table heading style}}
!Compartment!!Description!!Evidence!!Notes
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25711.B46aab7ec209b4&page=25711&pagename={{FULLPAGENAMEE}} edit table] || || ||
|}

{{Product_localization_help}}
<protect></protect>

===Notes===

==Structure and Physical Properties==
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<protect>
<big>'''Physical Properties'''</big>


{|{{Prettytable}}
|-
!{{table heading style}} |Sequence
|
[http://biocyc.org/ECOLI/sequence-aa?object=EG10823-MONOMER at EcoCyc]
<pre>MAIDENKQKA LAAALGQIEK QFGKGSIMRL GEDRSMDVET ISTGSLSLDI ALGAGGLPMG
RIVEIYGPES SGKTTLTLQV IAAAQREGKT CAFIDAEHAL DPIYARKLGV DIDNLLCSQP
DTGEQALEIC DALARSGAVD VIVVDSVAAL TPKAEIEGEI GDSHMGLAAR MMSQAMRKLA
GNLKQSNTLL IFINQIRMKI GVMFGNPETT TGGNALKFYA SVRLDIRRIG AVKEGENVVG
SETRVKVVKN KIAAPFKQAE FQILYGEGIN FYGELVDLGV KEKLIEKAGA WYSYKGEKIG
QGKANATAWL KDNPETAKEI EKKVRELLLS NPNSTPDFSV DDSEGVAETN EDF</pre>
|-
!{{table heading style}} |Mol. Wt
|
37.97 kDa (calc) <ref name='LIB:EcoCyc10.6'/>
|-
!{{table heading style}} |pI
|

|-
!{{table heading style}} |Extinction coefficient
|
21430 - 21805 (calc based on 7 Y, 2 W, and 3 C residues)
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25711.N46aab7ed4511a&page=25711&pagename={{FULLPAGENAMEE}} edit table]
|}

{{Product_physical_properties_help}}

<big>'''Domains/Motifs/Modification Sites'''</big>


{|class = 'sortable' {{Prettytable}} id='171249'
|- {{table heading style}}
!Type!!Residues!!Description!!Notes
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25711.F46aab7edb4c80&page=25711&pagename={{FULLPAGENAMEE}} edit table] || || ||
|}

{{Product_domains_motifs_help}}

<big>'''Structure'''</big>


{|class = 'sortable' {{Prettytable}} id='171250'
|- {{table heading style}}
!Structure Type!!Organism!!Accession!!Residues covered!!Notes
|-
|
NMR, MINIMIZED AVERAGE STRUCTURE

|
Escherichia coli

|
[http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1AA3 1AA3] C-TERMINAL DOMAIN OF THE E. COLI RECA, NMR, MINIMIZED AVERAGE STRUCTURE
|

|

|-
|
X-RAY DIFFRACTION

|
Escherichia coli

|
[http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1REA 1REA] STRUCTURE OF THE RECA PROTEIN-ADP COMPLEX
|

|

|-
|
X-RAY DIFFRACTION

|
Escherichia coli

|
[http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=2REB 2REB] THE STRUCTURE OF THE E. COLI RECA PROTEIN MONOMER AND POLYMER
|

|

|-
|
CRYO-ELECTRON MICROSCOPY

|
Escherichia coli

|
[http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=2REC 2REC] RECA HEXAMER MODEL, ELECTRON MICROSCOPY
|

|

|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25711.L46aab7ee1eae1&page=25711&pagename={{FULLPAGENAMEE}} edit table] || || || ||
|}

{{Product_structure_help}}
</protect>
===Notes===

==Gene Product Resources==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='171251'
|- {{table_heading_style}}
!Resource type!!Source!!Notes/Reference
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25711.Q46aab7f0ee79c&page=25711&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Product_resources_help}}
<protect></protect>
===Notes===

==Accessions in Other Databases==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='171252'
|- {{table_heading_style}}
!Database!!Accession!!Notes
|-
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10823-MONOMER EcoCyc:EG10823-MONOMER]
|

|-
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[http://www.expasy.ch/cgi-bin/sprot-search-ac?P0A7G6 UniProt:P0A7G6]
|

|-
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00154 PFAM:PF00154]
|

|-
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_417179 RefSeq:NP_417179]
|

|-
|
[http://www.rcsb.org/pdb PDB] ([[PDB|EcoliWiki Page]])
|
[http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=2REC PDB:2REC]
|

|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25711.L46aab7f158f4d&page=25711&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Product_accessions_help}}
<protect></protect>
===Notes===

==Links==
{{BacktoTop}}


{|class = 'sortable' {{Prettytable}} id='171253'
|- {{table_heading_style}}
!Name!!URL!!Comments
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25711.Z46aab7f4b719f&page=25711&pagename={{FULLPAGENAMEE}} edit table] || ||
|}

{{Links_help}}

<noinclude>
==References==
{{BacktoTop}}
{{RefHelp}}
<references/>
__NOTOC__
</noinclude>
===Categories===
{{BacktoTop}}
[[Category:GO:0005737_!_cytoplasm]][[Category:GO:0006310_!_DNA recombination]][[Category:GO:0006281_!_DNA repair]][[Category:GO:0006508_!_proteolysis]][[Category:GO:0009432_!_SOS response]][[Category:GO:0008233_!_peptidase activity]][[Category:Products with structures in PDB]]

recA:Quickview

2007-08-09T21:01:57Z

Aklingele: edited by Aklingele via TableEdit

Sandbox

2007-08-09T19:41:48Z

Aklingele:

'''''dinQ'''''

[[cynR]]
==here is a heading==

<protect>

{|{{Prettytable}}
|-
!bgcolor=#f875ba |
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.2.Q46b7474e3fba7&page=2&pagename={{FULLPAGENAMEE}} edit table]
|}
</protect>

Sandbox

2007-08-09T19:41:10Z

Aklingele:

'''''dinQ'''''

[[cynR]]
==here is a heading==

And I wrote some practice stuff below it.

<protect>

{|{{Prettytable}}
|-
!bgcolor=#f875ba |
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.2.Q46b7474e3fba7&page=2&pagename={{FULLPAGENAMEE}} edit table]
|}
</protect>
<blockquote>

Sandbox

2007-08-09T18:52:12Z

Aklingele: edited by Aklingele via TableEdit

User:Aklingele

2007-08-06T16:17:03Z

Aklingele: New page: Hello World!

Hello World!

Sandbox

2007-08-06T16:14:49Z

Aklingele: /* here is a heading */

[[cynR]]
==here is a heading==

And I wrote some practice stuff below it.

<protect>

{|{{Prettytable}}
|-
!bgcolor=#f875ba |Groovy
|
whoa - so little space what if i added a lot more and more and more and more
|-
!bgcolor=#f875ba |Super cool
|
[[recA]]
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.2.Q46b7474e3fba7&page=2&pagename={{FULLPAGENAMEE}} edit table]
|}
</protect>
<blockquote>
''Knowing is half the battle''</blockquote>
<s>oops</s>

moi nom --[[User:Aklingele|Aklingele]] 11:14, 6 August 2007 (CDT) [http://www.yahoo.com]

Sandbox

2007-08-06T16:12:58Z

Aklingele: edited by Aklingele via TableEdit

Sandbox

2007-08-06T16:11:18Z

Aklingele: /* here is a heading */

[[cynR]]
==here is a heading==

And I wrote some practice stuff below it.

<protect>

{|{{Prettytable}}
|-
! |Table Heading
|
whoa - so little space
|-
! |Super cool
|
[[recA]]
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.2.Q46b7474e3fba7&page=2&pagename={{FULLPAGENAMEE}} edit table]
|}
</protect>
<blockquote>
''Knowing is half the battle''</blockquote>

Sandbox

2007-08-06T16:10:28Z

Aklingele: edited by Aklingele via TableEdit

[[cynR]]
==here is a heading==

And I wrote some practice stuff below it.

<protect>

{|{{Prettytable}}
|-
! |Table Heading
|
whoa - so little space
|-
! |Super cool
|
[[recA]]
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.2.Q46b7474e3fba7&page=2&pagename={{FULLPAGENAMEE}} edit table]
|}
</protect>
<blockquote>
Knowing is half the battle
</blockquote>

Sandbox

2007-08-06T16:07:42Z

Aklingele:

[[cynR]]
==here is a heading==

And I wrote some practice stuff below it.

<protect>

{|class = 'sortable' {{Prettytable}} id='220139'
|-
!Table Heading !!Super cool
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.2.Q46b7474e3fba7&page=2&pagename={{FULLPAGENAMEE}} edit table] ||
|}
</protect>
<blockquote>
Knowing is half the battle
</blockquote>