EcoliWiki - User contributions [en]

PMID:6270337

2008-01-07T06:19:56Z

66.249.70.215: New PMID: Page!

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 '''Oka, A, Sugisaki, H and Takanami, M''' (1981) Nucleotide sequence of the kanamycin resistance transposon Tn903.''J. Mol. Biol.'' '''147''':217-26

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|{{TableHeadingColor}} |'''Abstract''' || No abstract in PubMed
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|{{TableHeadingColor}} nowrap |'''Links''' || [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=6270337 PubMed]
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==Significance {{HelpIcon|Help:Literature}} ==
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!Gene product!!Qualifier!!GO ID!!GO term name!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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PMID:160950

2008-01-04T16:23:37Z

66.249.70.215: New PMID: Page!

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 '''Inokuchi, H, Kodaira, M, Yamao, F and Ozeki, H''' (1979) Identification of transfer RNA suppressors in Escherichia coli. II. Duplicate genes for tRNA2Gln.''J. Mol. Biol.'' '''132''':663-77

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|{{TableHeadingColor}} |'''Abstract''' || No abstract in PubMed
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|{{TableHeadingColor}} nowrap |'''Links''' || [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=160950 PubMed]
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==Significance {{HelpIcon|Help:Literature}} ==
{{LitSignificance}}

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==Annotations {{HelpIcon|Help:Literature}}==
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{|class = 'sortable' {{Prettytable}} id='221955'
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!Gene product!!Qualifier!!GO ID!!GO term name!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.0.Q477e5d88c9636&page=0&pagename={{FULLPAGENAMEE}} edit table] || || || || || || || ||
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PMID:164464

2008-01-04T16:09:14Z

66.249.70.215: New PMID: Page!

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 '''Yaniv, M and Folk, WR''' (1975) The nucleotide sequences of the two glutamine transfer ribonucleic acids from Escherichia coli.''J. Biol. Chem.'' '''250''':3243-53

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|{{TableHeadingColor}} |'''Abstract''' || The nucleotide sequences of the two glutamine tRNA species in Escherichia coli K12 have been determined. Sufficient data was obtained to order unambiguously the products of complete RNase digestion of tRNA2Gln, and all but one oligonucleotide from tRNA1Gln. The sequence of tRNA1Gln was established by analogy with tRNA1Gln, as the two tRNAs are very similar, differing by only 7 residues out of 75. tRNA1Gln has the anticodon NUG, where N is a modified nucleotide which is likely to be a derivative of 2-thiouridine, and is specific for the codon CAA. tRNA1Gln has the anticodon CUG, and is specific for the codon CAG (Folk, W. R., and Yaniv, M. (1972) Nature 237, 165). The complete sequences of the tRNAGln species are: See journal for formula (Unique residues are enclosed in parentheses, with the residue in tRNA1Gln above that in tRNA2Gln.).
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|{{TableHeadingColor}} nowrap |'''Links''' || [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=164464 PubMed]
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==Significance {{HelpIcon|Help:Literature}} ==
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{|class = 'sortable' {{Prettytable}} id='221954'
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!Gene product!!Qualifier!!GO ID!!GO term name!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.0.J477e5a2a63b09&page=0&pagename={{FULLPAGENAMEE}} edit table] || || || || || || || ||
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PMID:15231754

2007-12-27T08:03:12Z

66.249.70.215: New PMID: Page!

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 '''Darling, AC, Mau, B, Blattner, FR and Perna, NT''' (2004) Mauve: multiple alignment of conserved genomic sequence with rearrangements.''Genome Res.'' '''14''':1394-403

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|{{TableHeadingColor}} |'''Abstract''' || As genomes evolve, they undergo large-scale evolutionary processes that present a challenge to sequence comparison not posed by short sequences. Recombination causes frequent genome rearrangements, horizontal transfer introduces new sequences into bacterial chromosomes, and deletions remove segments of the genome. Consequently, each genome is a mosaic of unique lineage-specific segments, regions shared with a subset of other genomes and segments conserved among all the genomes under consideration. Furthermore, the linear order of these segments may be shuffled among genomes. We present methods for identification and alignment of conserved genomic DNA in the presence of rearrangements and horizontal transfer. Our methods have been implemented in a software package called Mauve. Mauve has been applied to align nine enterobacterial genomes and to determine global rearrangement structure in three mammalian genomes. We have evaluated the quality of Mauve alignments and drawn comparison to other methods through extensive simulations of genome evolution.
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|{{TableHeadingColor}} nowrap |'''Links''' || [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15231754 PubMed]
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==Significance {{HelpIcon|Help:Literature}} ==
{{LitSignificance}}

== Useful Materials and Methods {{HelpIcon|Help:Literature}}==
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==Annotations {{HelpIcon|Help:Literature}}==
<protect>

{|class = 'sortable' {{Prettytable}} id='221949'
|- {{table heading style}}
!Gene product!!Qualifier!!GO ID!!GO term name!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.0.P47735c3f9194b&page=0&pagename={{FULLPAGENAMEE}} edit table] || || || || || || || ||
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